{"id":12186,"plugin_id":"Plugin_054ff933a434819187c4f95db80afc7f","kind":"skill","collection_source":null,"comparison_source":null,"observed_at":"2026-09-30T23:01:00.276Z","digest":"1411b83a90e81e9495a6a03e43114cff4176fcfdfae31d21bacc2486d7520cde","against":null,"payload":{"name":"pride-skill","description":"Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. Use when a user wants concise PRIDE summaries","included_files":[{"relative_path":"scripts/rest_request.py","size_in_bytes":1097}],"skill_md_contents":"---\nname: pride-skill\ndescription: Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. Use when a user wants concise PRIDE summaries\n---\n\n## Source presentation\n<!-- source-presentation-contract:v2 -->\n- Add claim-adjacent links only for substantive claims supported by returned `sources`; never cite empty, metadata-only, or failed lookups.\n- Preserve `checked_sources`, use only supported `canonical_url` mappings, and leave requested raw or machine-readable output unchanged.\n- Use the `pride-skill` entry in `../../references/source-links.json` and follow `../../references/source-presentation.md`.\n\n## Operating rules\n- Use `scripts/rest_request.py` for all PRIDE Archive calls.\n- Use `base_url=https://www.ebi.ac.uk/pride/ws/archive/v2`.\n- Start with `projects` for discovery and keep page sizes modest.\n- Prefer project-level metadata lookups over broad archive dumps.\n- Re-run requests in long conversations instead of relying on older tool output.\n\n## Execution behavior\n- Return concise markdown summaries from the script JSON by default.\n- Return raw JSON only if the user explicitly asks for machine-readable output.\n- Prefer these paths: `projects` and `projects/<PXD accession>`.\n\n## Input\n- Read one JSON object from stdin.\n- Required fields: `base_url`, `path`\n- Optional fields: `method`, `params`, `headers`, `json_body`, `form_body`, `record_path`, `response_format`, `max_items`, `max_depth`, `timeout_sec`, `save_raw`, `raw_output_path`\n- Common PRIDE patterns:\n  - `{\"base_url\":\"https://www.ebi.ac.uk/pride/ws/archive/v2\",\"path\":\"projects\",\"params\":{\"keyword\":\"proteomics\",\"pageSize\":10},\"max_items\":10}`\n  - `{\"base_url\":\"https://www.ebi.ac.uk/pride/ws/archive/v2\",\"path\":\"projects/PXD001357\"}`\n\n## Output\n- Success returns `ok`, `source`, `path`, `method`, `status_code`, `warnings`, and either compact `records` or a compact `summary`.\n- Use `raw_output_path` when `save_raw=true`.\n- Failure returns `ok=false` with `error.code` and `error.message`.\n\n## Execution\n```bash\necho '{\"base_url\":\"https://www.ebi.ac.uk/pride/ws/archive/v2\",\"path\":\"projects\",\"params\":{\"keyword\":\"proteomics\",\"pageSize\":10},\"max_items\":10}' | python scripts/rest_request.py\n```\n"},"changes":[],"summary":"First saved snapshot. No earlier version is available for comparison.","summary_kind":"deterministic","summary_metadata":{}}