{"id":24686,"plugin_id":"plugins~Plugin_7113e6f705948191bad2d24c30465361","kind":"skill","collection_source":null,"comparison_source":null,"observed_at":"2026-09-30T23:18:35.063Z","digest":"7c5d588e437b514fff483a1881b97f1db7d68a95511cc919c8fda62692551241","against":null,"payload":{"name":"bgee-skill","description":"Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. Use when a user wants concise Bgee summaries; save raw results only on request.","included_files":[{"relative_path":"agents/openai.yaml","size_in_bytes":89},{"relative_path":"scripts/sparql_request.py","size_in_bytes":7611}],"skill_md_contents":"---\nname: bgee-skill\ndescription: Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. Use when a user wants concise Bgee summaries; save raw results only on request.\n---\n\n## Operating rules\n- Use `scripts/sparql_request.py` for all Bgee SPARQL work.\n- Start with small `SELECT` or `ASK` queries and add `LIMIT` early.\n- Prefer ontology-aware, healthy wild-type expression questions over broad triple dumps.\n- Use `query_path` for longer SPARQL documents instead of pasting large inline queries.\n- Re-run requests in long conversations instead of relying on older tool output.\n\n## Execution behavior\n- Return concise markdown summaries from the SPARQL JSON by default.\n- Return raw results only if the user explicitly asks for machine-readable output.\n- Default to JSON result format unless the user explicitly asks for text output.\n\n## Input\n- Read one JSON object from stdin.\n- Required field: `query` or `query_path`\n- Optional fields: `method`, `params`, `response_format`, `max_items`, `max_depth`, `timeout_sec`, `save_raw`, `raw_output_path`\n- Common Bgee patterns:\n  - `{\"query\":\"ASK {}\"}`\n  - `{\"query\":\"SELECT * WHERE { ?s ?p ?o } LIMIT 3\",\"max_items\":3}`\n\n## Output\n- Success returns `ok`, `source`, a compact `summary`, and `raw_output_path` when `save_raw=true`.\n- Failure returns `ok=false` with `error.code` such as `invalid_json`, `invalid_input`, `network_error`, or `invalid_response`.\n\n## Execution\n```bash\necho '{\"query\":\"ASK {}\"}' | python scripts/sparql_request.py\n```\n\n## References\n- No additional runtime references are required; keep the import package limited to this file and `scripts/sparql_request.py`.\n"},"changes":[],"summary":"First saved snapshot. No earlier version is available for comparison.","summary_kind":"deterministic","summary_metadata":{}}