{"id":24700,"plugin_id":"plugins~Plugin_7113e6f705948191bad2d24c30465361","kind":"skill","collection_source":null,"comparison_source":null,"observed_at":"2026-09-30T23:18:35.606Z","digest":"c400d92adde544d8da77c0b787989ce292365eb19950b2455b5da86b269b5f65","against":null,"payload":{"name":"efo-ontology-skill","description":"Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. Use when a user wants concise EFO resolution or ontology-expansion summaries","included_files":[{"relative_path":"agents/openai.yaml","size_in_bytes":107},{"relative_path":"scripts/rest_request.py","size_in_bytes":10728}],"skill_md_contents":"---\nname: efo-ontology-skill\ndescription: Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. Use when a user wants concise EFO resolution or ontology-expansion summaries\n---\n\n## Operating rules\n- Use `scripts/rest_request.py` for all OLS4 and EFO API calls.\n- Use `base_url=https://www.ebi.ac.uk/ols4/api`.\n- Search, children, and descendant endpoints are better with `max_items=10`; single term lookups usually do not need `max_items`.\n- Use the smallest ontology expansion that answers the question.\n- Re-run requests in long conversations instead of relying on older tool output.\n- Treat displayed `...` in tool previews as UI truncation, not literal request content.\n\n## Execution behavior\n- Return concise markdown summaries from the script JSON by default.\n- Prefer these paths: `search`, `ontologies/efo/terms/<double-encoded-iri>`, and the corresponding `children` or `descendants` paths.\n- If the user needs the full payload, set `save_raw=true` and report the saved file path.\n\n## Input\n- Read one JSON object from stdin.\n- Required fields: `base_url`, `path`\n- Optional fields: `method`, `params`, `headers`, `json_body`, `form_body`, `record_path`, `response_format`, `max_items`, `max_depth`, `timeout_sec`, `save_raw`, `raw_output_path`\n- Common OLS4 patterns:\n  - `{\"base_url\":\"https://www.ebi.ac.uk/ols4/api\",\"path\":\"search\",\"params\":{\"q\":\"asthma\",\"ontology\":\"efo\"},\"record_path\":\"response.docs\",\"max_items\":10}`\n  - `{\"base_url\":\"https://www.ebi.ac.uk/ols4/api\",\"path\":\"ontologies/efo/terms/http%253A%252F%252Fwww.ebi.ac.uk%252Fefo%252FEFO_0000270\"}`\n  - `{\"base_url\":\"https://www.ebi.ac.uk/ols4/api\",\"path\":\"ontologies/efo/terms/http%253A%252F%252Fwww.ebi.ac.uk%252Fefo%252FEFO_0000270/descendants\",\"record_path\":\"_embedded.terms\",\"max_items\":10}`\n\n## Output\n- Success returns `ok`, `source`, `path`, `method`, `status_code`, `warnings`, and either compact `records` or a compact `summary`.\n- Use `raw_output_path` when `save_raw=true`.\n- Failure returns `ok=false` with `error.code` and `error.message`.\n\n## Execution\n```bash\necho '{\"base_url\":\"https://www.ebi.ac.uk/ols4/api\",\"path\":\"search\",\"params\":{\"q\":\"asthma\",\"ontology\":\"efo\"},\"record_path\":\"response.docs\",\"max_items\":10}' | python scripts/rest_request.py\n```\n\n## References\n- No additional runtime references are required; keep the import package limited to this file and `scripts/rest_request.py`.\n"},"changes":[],"summary":"First saved snapshot. No earlier version is available for comparison.","summary_kind":"deterministic","summary_metadata":{}}