{"id":7383,"plugin_id":"plugin_asdk_app_6a5fc156fad88191a3977b60131d7391","kind":"skill","collection_source":null,"comparison_source":null,"observed_at":"2026-09-30T22:50:28.772Z","digest":"f2b1953516f6610c57eff3805a2e11912c4bb2184fee5b32ed4fee17380ba0fe","against":null,"payload":{"name":"tamarind-mcp-more-tools","description":"Discover and run Tamarind Bio tools outside the dedicated MCP structure, binder, antibody, docking, inverse-folding, and developability skills. Use for enzymes, small-molecule properties or QM, molecular dynamics, nucleic acids, cryo-EM, structure search, and utilities. Not for a domain with a dedicated Tamarind MCP skill.","included_files":[],"skill_md_contents":"---\nname: tamarind-mcp-more-tools\ndescription: Discover and run Tamarind Bio tools outside the dedicated MCP structure, binder, antibody, docking, inverse-folding, and developability skills. Use for enzymes, small-molecule properties or QM, molecular dynamics, nucleic acids, cryo-EM, structure search, and utilities. Not for a domain with a dedicated Tamarind MCP skill.\n---\n\n# Use the long-tail Tamarind MCP catalog\n\nThe catalog changes frequently. Start with `listModalities` and `listTags`, then call `getAvailableTools` with the narrowest relevant `modality`, `function`, or `search`. Inspect candidate schemas with `getJobSchema`.\n\n## Select by domain\n\n- Enzymes: distinguish function prediction, activity, stability, design, and substrate specificity.\n- Small molecules: distinguish ADME/ADMET, property prediction, conformation, quantum chemistry, and generation.\n- Molecular dynamics: confirm force field, solvent, atom count, simulation length, replicas, and whether the schema expects a prepared system.\n- Nucleic acids: preserve RNA/DNA identity, modifications, complexes, and desired structure or design output.\n- Cryo-EM: confirm map format, resolution, sequence/model inputs, fitting versus reconstruction, and output expectations.\n- Search/utilities: avoid paid managed compute when a trivial local conversion or calculation is sufficient.\n\nRecommend one primary tool and conditional alternatives only when the live catalog supports them. Identify upstream file/structure requirements and downstream validation.\n\n## Validate and execute\n\nUpload required files with `uploadFile`, call `validateJob`, reject mutation warnings, and call `estimateTime`. Surface the domain-specific parameters that affect scientific meaning and spend.\n\nUse `tamarind-mcp-submit-and-poll` for one authorized run, `tamarind-mcp-batch` for one tool over independent inputs, and `tamarind-mcp-pipeline` for dependent stages. Some settings may fan out internally; inspect the returned row and expansion estimate instead of assuming one submission means one compute unit.\n"},"changes":[],"summary":"First saved snapshot. No earlier version is available for comparison.","summary_kind":"deterministic","summary_metadata":{}}