Update to Life Science Research

{
  "name": "civic-skill",
  "description": "Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries",
  "included_files": [
    {
      "relative_path": "agents/openai.yaml",
      "size_in_bytes": 95
    },
    {
      "relative_path": "scripts/civic_graphql.py",
      "size_in_bytes": 5607
    }
  ],
  "skill_md_contents": "---\nname: civic-skill\ndescription: Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries\n---\n\n## Operating rules\n- Use `scripts/civic_graphql.py` for all CIViC GraphQL work.\n- Keep selection sets narrow and start with schema or targeted entity queries.\n- Use `query_path` for longer GraphQL documents instead of pasting large inline queries.\n- Re-run requests in long conversations instead of relying on older tool output.\n\n## Execution behavior\n- Return concise markdown summaries from the script JSON by default.\n- Return raw JSON only if the user explicitly asks for machine-readable output.\n- Prefer sanity, schema, and targeted evidence queries over broad graph dumps.\n\n## Input\n- Read one JSON object from stdin.\n- Required field: `query` or `query_path`\n- Optional fields: `variables`, `max_items`, `max_depth`, `timeout_sec`, `save_raw`, `raw_output_path`\n- Common CIViC patterns:\n  - `{\"query\":\"query { __typename }\"}`\n  - `{\"query\":\"query { __schema { queryType { fields { name } } } }\",\"max_items\":20}`\n\n## Output\n- Success returns `ok`, `source`, `top_keys`, a compact `summary`, and `raw_output_path` when `save_raw=true`.\n- Failure returns `ok=false` with `error.code` such as `invalid_json`, `invalid_input`, `network_error`, `invalid_response`, or `graphql_error`.\n\n## Execution\n```bash\necho '{\"query\":\"query { __typename }\"}' | python scripts/civic_graphql.py\n```\n\n## References\n- No additional runtime references are required; keep the import package limited to this file and `scripts/civic_graphql.py`.\n"
}