Update to Life Science Research

{
  "name": "genebass-gene-burden-skill",
  "description": "Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Use when a user wants concise Genebass PheWAS summaries",
  "included_files": [
    {
      "relative_path": "agents/openai.yaml",
      "size_in_bytes": 110
    },
    {
      "relative_path": "scripts/genebass_gene_burden.py",
      "size_in_bytes": 9739
    }
  ],
  "skill_md_contents": "---\nname: genebass-gene-burden-skill\ndescription: Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Use when a user wants concise Genebass PheWAS summaries\n---\n\n## Operating rules\n- Use `scripts/genebass_gene_burden.py` for all Genebass calls.\n- This skill accepts one Ensembl gene ID per invocation.\n- `max_results` is flexible; start around `25` for broad summaries and increase only if the user explicitly wants more associations.\n- Re-run requests in long conversations instead of relying on older tool output.\n- Treat displayed `...` in tool previews as UI truncation, not literal request content.\n\n## Execution behavior\n- Return concise markdown summaries from the script JSON by default.\n- Return raw JSON only if the user explicitly asks for machine-readable output.\n- Supported burden sets are `pLoF`, `missense|LC`, and `synonymous`, with the aliases already handled by the script.\n- If the user needs the full result set, increase `max_results` deliberately instead of dumping everything by default.\n\n## Input\n- Read JSON from stdin as either a string Ensembl ID or an object.\n- String form:\n  - `\"ENSG00000173531\"`\n- Object form:\n  - `{\"ensembl_gene_id\":\"ENSG00000173531\",\"burden_set\":\"pLoF\",\"max_results\":25}`\n\n## Output\n- Success returns `ok`, `source`, input metadata, `gene`, association counts, `truncated`, and compact `associations`.\n- Failure returns `ok=false` with `error.code` and `error.message`.\n\n## Execution\n```bash\necho '{\"ensembl_gene_id\":\"ENSG00000173531\",\"burden_set\":\"pLoF\",\"max_results\":25}' | python scripts/genebass_gene_burden.py\n```\n\n## References\n- No additional runtime references are required; keep the import package limited to this file and `scripts/genebass_gene_burden.py`.\n"
}