Update to Life Science Research

{
  "name": "metabolights-skill",
  "description": "Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Use when a user wants concise MetaboLights summaries",
  "included_files": [
    {
      "relative_path": "agents/openai.yaml",
      "size_in_bytes": 100
    },
    {
      "relative_path": "scripts/rest_request.py",
      "size_in_bytes": 10728
    }
  ],
  "skill_md_contents": "---\nname: metabolights-skill\ndescription: Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Use when a user wants concise MetaboLights summaries\n---\n\n## Operating rules\n- Use `scripts/rest_request.py` for all MetaboLights calls.\n- Use `base_url=https://www.ebi.ac.uk/metabolights/ws`.\n- Start with `studies` for archive browsing and `studies/<MTBLS accession>` for targeted records.\n- Keep study discovery narrow and paged rather than pulling very large pages.\n- Re-run requests in long conversations instead of relying on older tool output.\n\n## Execution behavior\n- Return concise markdown summaries from the script JSON by default.\n- Return raw JSON only if the user explicitly asks for machine-readable output.\n- Prefer these paths: `studies` and `studies/<MTBLS accession>`.\n\n## Input\n- Read one JSON object from stdin.\n- Required fields: `base_url`, `path`\n- Optional fields: `method`, `params`, `headers`, `json_body`, `form_body`, `record_path`, `response_format`, `max_items`, `max_depth`, `timeout_sec`, `save_raw`, `raw_output_path`\n- Common MetaboLights patterns:\n  - `{\"base_url\":\"https://www.ebi.ac.uk/metabolights/ws\",\"path\":\"studies\",\"record_path\":\"content\",\"max_items\":10}`\n  - `{\"base_url\":\"https://www.ebi.ac.uk/metabolights/ws\",\"path\":\"studies/MTBLS1\"}`\n\n## Output\n- Success returns `ok`, `source`, `path`, `method`, `status_code`, `warnings`, and either compact `records` or a compact `summary`.\n- Use `raw_output_path` when `save_raw=true`.\n- Failure returns `ok=false` with `error.code` and `error.message`.\n\n## Execution\n```bash\necho '{\"base_url\":\"https://www.ebi.ac.uk/metabolights/ws\",\"path\":\"studies\",\"record_path\":\"content\",\"max_items\":10}' | python scripts/rest_request.py\n```\n\n## References\n- No additional runtime references are required; keep the import package limited to this file and `scripts/rest_request.py`.\n"
}