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Scientific Research Codex plugins

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Scientific Research plugins 6

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Oliver's mTOR AtlasPetr Barton

Publisher full description

…longevity. Every study is linked to genes, complexes, drugs, diseases and processes, and carries a code for the kind of study behind the finding: synthesis of human data, human study, animal model, molecular/in vitro, review, preprint or registered trial. The code names the system a result was established in; it is not a quality grade. With this plugin the assistant can search studies by keyword, evidence code, linked entity and year; look up genes, drugs, diseases and processes with their studies and pathway re…

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Publisher capabilities · listing

Search curated mTOR studies by keyword, evidence code, entity and year Show supporting and contradicting studies for a pathway claim Look up genes, drugs, diseases and processes in the mTOR network List contested claims and open research questions R…

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Scientific ResearchVersion 1.2.5
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PTS Pivotal Token SearchPTS (codelion)Guides you through finding the reasoning events that change a language model's outcome with the open-source PTS framework.

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PTS (codelion)

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Publisher full description

…read the output: probability shifts, the shared category labels, and why latent readout scores are not comparable to probability changes. It covers the hosted visualizer, linking events into chains, and exporting results as datasets for preference tuning or steering. It states the limits plainly: s…

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Scientific ResearchVersion 0.1.0
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Biological Sequence & Alignment ViewerOpenAI

Publisher full description

…er ABIF/SCF traces, and supported SnapGene DNA files. Navigate linear or circular records, manage annotations, translate with the right genetic code, find ORFs, explore primers and restriction digests, inspect measured chromatogram signals, align or edit copies, build graphical guide trees, load mapped variant/read evidence, export reproducib…

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Scientific ResearchVersion 0.1.53
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BoltzBoltz

Publisher full description

Use Boltz from Codex for biomolecular modeling workflows: predict structure and binding for protein, RNA, DNA, and ligand complexes; rank small-molecule or protein libraries against targets; and design novel small molecules, peptides, antibodies, nanobodies, or custom protein binders with structures and confidence metrics.

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Scientific ResearchVersion 0.1.1
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Peptide CriticPeptide Critic

Publisher description

…ce comparison for research peptides such as BPC-157, GHK-Cu and TB-500. Find compounds by name or synonym, compare vendor ratings and review counts, inspect vendor-level lab-verified COA and warning flags, compare list and discounted prices per milligram, and find coupon codes. Filter comparisons by vendors' shipping origin and pack size, or look up a vendor profile. Results use Peptide Critic's Best Value ranking, which favors partners when offers are comparable; ret…

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Scientific ResearchVersion 1.0.0
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Seq2MusicJacob Michael Vogan

Publisher full description

Seq2Music turns protein, DNA, and RNA sequences into music and score sheets. It can both encode and decode. It can also convert your audio a new protein, DNA, or RNA sequence by matching sounds and notes to sequence letters.

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Publisher description

…line biological sequence/music conversion with reversible MIDI, WAV, and MusicXML, accessible score notation, and lossy arbitrary-audio transcription.

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Scientific ResearchVersion 0.3.2
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