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Scientific Research Codex plugins

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Explore 5,324 plugins across 14 categories.

Scientific Research plugins 8

1–8 of 8

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Biological Sequence & Alignment ViewerOpenAIInspect, analyze, safely edit, and compare biological sequences and alignments.

Publisher subtitle

Inspect, analyze, and compare biological sequences and alignments in Codex.

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Biological Sequence & Alignment Viewer helps you inspect, analyze, safely edit, and compare FASTA, GenBank, EMBL, FASTQ, multiple sequence alignments, Sanger ABIF/SCF traces, and supported SnapGene DNA files. Navigate linear or circular records, manage annotations, translate with the right genetic code, find ORFs, explore primers and restriction digests, inspect measured chromatogram signals, align or edit copies, build graphical guide trees, load mapped variant/read evidence, export reproducib…

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Plugin name

Biological Sequence & Alignment Viewer

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Package name

sequence-viewer

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Publisher capabilities · listing

Interactive Read Write

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Publisher keywords · listing

sequence alignment msa fasta fastq genbank embl snapgene sanger abif scf a3m stockholm bioinformatics

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Publisher description

Inspect, analyze, safely edit, and compare biological sequences and alignments.

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Scientific ResearchVersion 0.1.43
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Molecular Structure ViewerOpenAIQuery, analyze, compare, style, animate, and render molecular structures with revisioned Mol* scenes.

Publisher subtitle

Visualize and interact with molecular structures in Codex.

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Publisher full description

Molecular Structure Viewer provides a compact Select, Analyze, Compare, Related data, Style, Animate, and Export workbench over Mol*. Use one revisioned atom-level query and scene contract across the UI and Codex to measure geometry, browse source-relative molecular companions, inspect contacts and density, compare aligned structures, style independent layers, play trajectories, restore named scenes and…

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Molecular Structure Viewer

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Package name

structure-viewer

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Publisher capabilities · listing

Interactive Read Write

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Publisher keywords · listing

structure pdb cif mmcif mol sdf mol2 pqr pdbqt gro xyz molstar protein ligand molecule bioinformatics rendering alignment animation movie png mp4 density trajectory analysis

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Publisher description

Query, analyze, compare, style, animate, and render molecular structures with revisioned Mol* scenes.

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Scientific ResearchVersion 0.1.90
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Peptide CriticPeptide Critic

Publisher description

Peptide Critic provides independent vendor reviews, third-party lab testing and price comparison for research peptides such as BPC-157, GHK-Cu and TB-500. Find compounds by name or synonym, compare vendor rati… …b-verified COA and warning flags, compare list and discounted prices per milligram, and find coupon codes. Filter comparisons by vendors' shipping origin and pack size, or look up a vendor profile. Results use Peptide Critic's Best Value ranking, which favors partners when offers are comparable; ret…

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Plugin name

Peptide Critic

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Publisher subtitle

Peptide reviews & prices

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Scientific ResearchVersion 1.0.0
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SciGrant大地 紺野

Publisher description

…を確認し、項目や工程ごとに利用者の確認を待ちながら進めます。生成された文章、引用文献、数値と公募条件は利用者による確認が必要です。採択を保証するサービスではありません。 完全版の執筆支援には、SciGrantの有効な利用権を登録した会員アカウントへの接続が必要です。既存の購入者は、提供済みの有料note内の登録リンクで製品の利用権を登録し、ChatGPT/Codexでプラグインを追加した後、登録時と同じログイン方法・同じ会員アカウントで接続してください。会員アカウントはnoteやChatGPTの登録アカウントと異なっていても利用できます。ログインだけでは利用権は付与されず、SciDraftの利用権とは別です。 会員サーバーは認証、製品別の利用権確認、保存済み執筆手順の配信を行い、その手順を受けたChatGPT/Codexが作成を支援します。研究資料…

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SciGrant

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Scientific ResearchVersion 0.1.0
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Biohub ESMChan Zuckerberg Biohub, Inc.Understand proteins with ESM: explore mutation landscapes, interpret learned features, predict and view structures, discover relatives, a...

Publisher keywords · listing

biohub esm esmc esmfold2 esm-atlas protein-language-model mutation-landscape sparse-autoencoder multiple-sequence-alignment structure-prediction protein-design computational-biology modal hugging-face

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Publisher subtitle

Understand proteins with ESM

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Publisher capabilities · listing

Interactive Read Write

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Publisher

Chan Zuckerberg Biohub, Inc.

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Publisher description

Understand proteins with ESM: explore mutation landscapes, interpret learned features, predict and view structures, discover relatives, and plan binder workflows.

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Publisher full description

Biohub ESM helps you understand proteins from a name, sequence, or file: explore mutation landscapes, interpret what ESMC sees, predict and view all-atom structures, and discover related proteins. It chooses the right ESM wor…

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Scientific ResearchVersion 0.2.4
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BoltzBoltz

Publisher full description

Use Boltz from Codex for biomolecular modeling workflows: predict structure and binding for protein, RNA, DNA, and ligand complexes; rank small-molecule or protein libraries against targets; and design novel small m…

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Publisher subtitle

Predict structures, screen molecules and proteins, and design binders

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Publisher capabilities · listing

Interactive Write

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Publisher keywords · package

boltz boltz-api go-cli computational-biology protein-design protein-screening small-molecule-design virtual-screening structure-prediction molecular-modeling drug-discovery biotech

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Publisher description

Predict structures, screen molecules and proteins, and design binders.

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Scientific ResearchVersion 0.1.1
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QualiTaTiQualitati

Publisher description

QualiTaTi is an AI-powered qualitative research platform used by academic and UX researchers. This plugin connects ChatGPT and Codex to your QualiTaTi account through a hosted MCP server, so you can run a study end to end without leaving the conversation. What you can do: - Interview studies: create an AI-interview project fr…

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Publisher subtitle

Run AI interviews and surveys

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Scientific ResearchVersion 1.0.0
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Seq2MusicJacob Michael Vogan

Publisher full description

Seq2Music turns protein, DNA, and RNA sequences into music and score sheets. It can both encode and decode. It can also convert your audio a new protein, DNA, or RNA sequence by matching sounds and notes to sequence letters.

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Publisher subtitle

Convert sequences to music

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Publisher capabilities · listing

Interactive Read Write

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Publisher keywords · listing

bioinformatics sonification protein sequence midi

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Publisher description

Offline biological sequence/music conversion with reversible MIDI, WAV, and MusicXML, accessible score notation, and lossy arbitrary-audio transcription.

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Scientific ResearchVersion 0.3.2
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