src/sequence/__fixtures__/official-vcf-4.3-first-100-sample-variant.vcf

##fileformat=VCFv4.3
##INFO=<ID=LDAF,Number=1,Type=Float,Description="MLE Allele Frequency Accounting for LD">
##INFO=<ID=AVGPOST,Number=1,Type=Float,Description="Average posterior probability from MaCH/Thunder">
##INFO=<ID=RSQ,Number=1,Type=Float,Description="Genotype imputation quality from MaCH/Thunder">
##INFO=<ID=ERATE,Number=1,Type=Float,Description="Per-marker Mutation rate from MaCH/Thunder">
##INFO=<ID=THETA,Number=1,Type=Float,Description="Per-marker Transition rate from MaCH/Thunder">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="Confidence interval around END for imprecise variants">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="Confidence interval around POS for imprecise variants">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=HOMLEN,Number=.,Type=Integer,Description="Length of base pair identical micro-homology at event breakpoints">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="Difference in length between REF and ALT alleles">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Alternate Allele Count">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total Allele Count">
##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=DEL:ABC,Description="Deletion with valid suffix">
##FILTER=<ID=FIL.1,Description="Valid filter">
##FILTER=<ID=STD_FILTER,Description="Standard filter">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=DS,Number=1,Type=Float,Description="Genotype dosage from MaCH/Thunder">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihoods">
##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele, ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/pilot_data/technical/reference/ancestral_alignments/README">
##INFO=<ID=AF,Number=A,Type=Float,Description="Global Allele Frequency based on AC/AN">
##INFO=<ID=AMR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from AMR based on AC/AN">
##INFO=<ID=ASN_AF,Number=1,Type=Float,Description="Allele Frequency for samples from ASN based on AC/AN">
##INFO=<ID=AFR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from AFR based on AC/AN">
##INFO=<ID=EUR_AF,Number=1,Type=Float,Description="Allele Frequency for samples from EUR based on AC/AN">
##INFO=<ID=VT,Number=1,Type=String,Description="indicates what type of variant the line represents">
##INFO=<ID=SNPSOURCE,Number=.,Type=String,Description="indicates if a snp was called when analysing the low coverage or exome alignment data">
##INFO=<ID=ValidSourceVersion,Number=1,Type=Float,Description="Global Allele Frequency based on AC/AN",Source="This source is valid",Version="This version is valid">
##assembly=ftp://user@host:8080/path/to/file.fastq
##PEDIGREE=<ID=Pedigree1,Original=Something>
##PEDIGREE=<ID=Pedigree2,Name_0=Something,Name_1=Something-else>
##pedigreeDB=ftp://user@host:8080/path/to/pedigreeDB?arg1=db1
##contig=<ID=1>
##contig=<ID=contig_url,URL=ftp://user@host:8080/path/to/contig>
##contig=<ID=contig_accession,species="Homo sapiens",accession=GCA_000001405.1>
##SAMPLE=<ID=Sample_ok,Genomes=G1_ID;G2_ID;GK_ID,Mixture=N1;N2;NK,Description="S1;S2;SK">
##reference=GRCh37
##MYID=<ID=MINE,Number=1,Type=String,Description="Some random tag">
##MYID=<ID=MINE2,Number=1,Type=String,Description="Some random tag,with commas">
##AnalysisTitleQuotes="FINRISK: Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)"
##AnalysisTitleStructured=<ID=FINRISK,Description="Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)">
##AnalysisTitlePlain=FINRISK: Whole-exome sequencing of Dietary, life style, and genetic determinants of obesity and metabolic syndrome (DILGOM)
##source_20130015.4=vcf-annotate(r810) -c CHROM,POS,dbSNPmismatch,REF,ALT,- -a /nfs/users/nfs_p/pd3/sandbox/hapmap/dbSNP-b137/annots-rsIDs-dbSNPv137.2012-09-13.snp-indels.tab.gz -d key=INFO,ID=dbSNPmismatch,Number=0,Type=Flag,Description=The position in the dbSNP but alleles different -f /lustre/scratch106/projects/uk10k/BUILD/vrtrack_uk10k_cohort/REL-2012-06-02/calling/snps-indels/config/dbSNPmismatch.filt
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00096	HG00097	HG00099	HG00100	HG00101	HG00102	HG00103	HG00104	HG00106	HG00108	HG00109	HG00110	HG00111	HG00112	HG00113	HG00114	HG00116	HG00117	HG00118	HG00119	HG00120	HG00121	HG00122	HG00123	HG00124	HG00125	HG00126	HG00127	HG00128	HG00129	HG00130	HG00131	HG00133	HG00134	HG00135	HG00136	HG00137	HG00138	HG00139	HG00140	HG00141	HG00142	HG00143	HG00146	HG00148	HG00149	HG00150	HG00151	HG00152	HG00154	HG00155	HG00156	HG00158	HG00159	HG00160	HG00171	HG00173	HG00174	HG00176	HG00177	HG00178	HG00179	HG00180	HG00182	HG00183	HG00185	HG00186	HG00187	HG00188	HG00189	HG00190	HG00231	HG00232	HG00233	HG00234	HG00235	HG00236	HG00237	HG00238	HG00239	HG00240	HG00242	HG00243	HG00244	HG00245	HG00246	HG00247	HG00249	HG00250	HG00251	HG00252	HG00253	HG00254	HG00255	HG00256	HG00257	HG00258	HG00259	HG00260	HG00261
1	10583	rs58108140	G	A	100	PASS	AVGPOST=0.7707;RSQ=0.4319;LDAF=0.2327;ERATE=0.0161;AN=2184;VT=SNP;AA=.;THETA=0.0046;AC=314;SNPSOURCE=LOWCOV;AF=0.14;ASN_AF=0.13;AMR_AF=0.17;AFR_AF=0.04;EUR_AF=0.21	GT:DS:GL	0|0:0.200:-0.18,-0.47,-2.42	0|0:0.150:-0.24,-0.44,-1.16	0|0:0.150:-0.15,-0.54,-3.12	0|1:0.600:-0.48,-0.48,-0.48	0|0:0.550:-0.48,-0.48,-0.48	0|1:0.950:-1.92,-0.01,-2.50	0|0:0.050:-0.05,-0.93,-5.00	0|0:0.100:-0.11,-0.66,-4.22	0|1:0.550:-0.28,-0.43,-0.96	0|0:0.450:-0.48,-0.48,-0.48	0|0:0.450:-0.26,-0.39,-1.43	0|0:0.250:-0.20,-0.44,-2.00	0|1:1.450:-3.11,-0.46,-0.19	0|1:0.950:-1.93,-0.01,-4.10	0|0:0.200:-0.16,-0.52,-3.22	0|0:0.500:-0.48,-0.48,-0.48	0|0:0.550:-0.40,-0.43,-0.63	0|0:0.150:-0.11,-0.65,-4.40	0|0:0.250:-0.44,-0.46,-0.54	0|1:0.900:-1.10,-0.04,-5.00	0|1:1.000:-1.30,-0.02,-5.00	0|0:0.150:-0.08,-0.77,-4.70	0|1:0.650:-0.48,-0.48,-0.48	0|0:0.650:-0.48,-0.48,-0.48	0|0:0.250:-0.18,-0.47,-2.10	0|1:0.550:-0.48,-0.48,-0.48	0|0:0.450:-0.46,-0.47,-0.51	0|0:0.300:-0.19,-0.46,-2.24	0|0:0.250:-0.09,-0.73,-4.40	0|0:0.450:-0.48,-0.48,-0.48	0|0:0.050:-0.10,-0.70,-3.74	0|0:0.300:-0.25,-0.39,-1.52	0|0:0.550:-0.48,-0.48,-0.48	0|0:0.000:-0.02,-1.42,-5.00	0|0:0.050:-0.01,-1.55,-5.00	0|0:0.600:-0.48,-0.48,-0.48	0|0:0.550:-0.48,-0.48,-0.48	0|1:1.250:-2.83,-0.46,-0.19	0|1:0.950:-1.10,-0.10,-0.87	0|1:0.850:-0.48,-0.48,-0.48	0|0:0.100:-0.04,-1.01,-5.00	0|0:0.200:-0.13,-0.59,-3.06	0|0:0.500:-0.29,-0.44,-0.94	0|1:0.950:-2.14026,-0.0169062,-1.50948	0|0:0.300:-0.19,-0.46,-2.24	0|0:0.450:-0.18,-0.48,-2.28	0|0:0.300:-0.48,-0.48,-0.48	0|0:0.400:-0.48,-0.48,-0.48	0|1:1.000:-4.40,-0.02,-1.44	0|1:0.550:-0.18,-0.47,-2.28	0|1:1.200:-1.59448,-0.0624219,-0.96481	0|0:0.100:-0.18,-0.47,-2.43	0|0:0.500:-0.41,-0.44,-0.61	0|0:0.350:-0.19,-0.46,-2.55	0|0:0.150:-0.11,-0.66,-4.40	0|1:1.000:-2.05,-0.03,-1.33	0|0:0.050:-0.03,-1.23,-5.00	0|0:0.150:-0.10,-0.68,-4.10	0|1:1.000:-1.99,-0.02,-1.40	0|0:0.250:-0.18,-0.47,-2.35	0|1:0.800:-1.23,-0.03,-4.70	0|0:0.150:-0.21,-0.43,-1.92	0|0:0.150:-0.11,-0.66,-3.34	0|0:0.250:-0.10,-0.68,-4.40	0|0:0.350:-0.48,-0.48,-0.48	0|0:0.250:-0.48,-0.48,-0.48	0|1:0.600:-0.48,-0.48,-0.48	0|0:0.400:-0.18,-0.47,-2.23	0|1:1.000:-5.00,-0.01,-1.62	0|1:1.000:-1.78,-0.01,-3.17	0|1:1.050:-5.00,-0.07,-0.81	0|0:0.500:-0.26,-0.44,-1.04	0|0:0.450:-0.48,-0.48,-0.48	0|0:0.050:-0.05,-0.96,-5.00	0|0:0.400:-0.10,-0.67,-4.40	0|1:0.550:-0.21,-0.43,-2.05	0|0:0.650:-0.48,-0.48,-0.48	0|0:0.150:-0.26,-0.39,-1.34	0|0:0.050:-0.02,-1.42,-5.00	0|0:0.550:-0.48,-0.48,-0.48	0|0:0.050:-0.06,-0.91,-5.00	0|0:0.150:-0.18,-0.47,-2.35	0|0:0.700:-0.48,-0.48,-0.48	0|1:1.400:-2.84,-0.46,-0.19	0|0:0.250:-0.194064,-0.458221,-1.91364	0|0:0.450:-0.18,-0.47,-2.08	0|0:0.050:-0.07,-0.81,-5.00	0|0:0.650:-0.48,-0.48,-0.48	0|0:0.350:-0.48,-0.48,-0.48	0|0:0.300:-0.21,-0.44,-1.67	0|0:0.450:-0.48,-0.48,-0.48	0|1:1.000:-1.82,-0.03,-1.23	0|1:0.800:-0.48,-0.48,-0.48	0|0:0.300:-0.23,-0.42,-1.63	0|0:0.300:-0.20,-0.46,-1.82	0|1:0.650:-0.48,-0.48,-0.48	0|1:1.000:-5.00,-0.01,-1.94	0|1:0.850:-0.48,-0.48,-0.48	0|0:0.350:-0.33,-0.42,-0.84	0|1:1.300:-2.60,-0.46,-0.19