← Files NGS Analysis WorkbenchARCHIVED FILE

tests/fixtures/execution_observation/goldens/nextflow.json

3.52 KB · Oct 5, 2026 · 18:12 UTC

↓ Download file

{
  "attempts": [
    {
      "attempt_id": "1",
      "attempt_number": null,
      "completed_at": null,
      "container": null,
      "cpu": "106.8%",
      "duration": "16.9s",
      "exit_code": 0,
      "native_id": "41710",
      "peak_rss": "11.9 MB",
      "peak_vmem": "17.6 MB",
      "process": "NFCORE_DEMO:DEMO:COWPY",
      "process_label": "COWPY",
      "realtime": "61ms",
      "sample_or_shard": null,
      "started_at": null,
      "state": "completed",
      "submitted_at": "2026-08-07 18:07:41.705",
      "task_hash": "da/fc9f54",
      "task_id": "1",
      "workdir": null
    },
    {
      "attempt_id": "2",
      "attempt_number": null,
      "completed_at": null,
      "container": null,
      "cpu": "194.7%",
      "duration": "48.9s",
      "exit_code": 0,
      "native_id": "41677",
      "peak_rss": "1.2 GB",
      "peak_vmem": "15.4 GB",
      "process": "NFCORE_DEMO:DEMO:FASTQC",
      "process_label": "FASTQC",
      "realtime": "24.3s",
      "sample_or_shard": "SRR8288062",
      "started_at": null,
      "state": "completed",
      "submitted_at": "2026-08-07 18:07:40.962",
      "task_hash": "2a/377136",
      "task_id": "2",
      "workdir": null
    },
    {
      "attempt_id": "3",
      "attempt_number": null,
      "completed_at": null,
      "container": null,
      "cpu": "158.6%",
      "duration": "36.3s",
      "exit_code": 0,
      "native_id": "42254",
      "peak_rss": "921.4 MB",
      "peak_vmem": "17.5 GB",
      "process": "NFCORE_DEMO:DEMO:MULTIQC",
      "process_label": "MULTIQC",
      "realtime": "7.3s",
      "sample_or_shard": "demo",
      "started_at": null,
      "state": "completed",
      "submitted_at": "2026-08-07 18:08:30.888",
      "task_hash": "38/7a3330",
      "task_id": "3",
      "workdir": null
    }
  ],
  "attempts_truncated": false,
  "count_unit": "task_attempts",
  "counts": {
    "aborted": 0,
    "cached": 0,
    "completed": 3,
    "failed": 0,
    "queued": 0,
    "running": 0,
    "total": 3,
    "unknown": 0
  },
  "engine": "nextflow",
  "evidence": {
    "append_only": true,
    "available": true,
    "coverage": "flushed task attempts",
    "ignored_record_count": 0,
    "kind": "nextflow_trace",
    "path": "workflow/trace.txt",
    "reason": null,
    "record_count": 3
  },
  "progress": {
    "completed": 3,
    "determinate": false,
    "finished_attempts": 3,
    "reason": "the trace contains observed attempts, not a planned task denominator",
    "total": null
  },
  "schema_version": 1,
  "structure": {
    "kind": "discovered_processes",
    "ordering": "first_terminal_observation",
    "processes": [
      {
        "counts": {
          "aborted": 0,
          "cached": 0,
          "completed": 1,
          "failed": 0,
          "queued": 0,
          "running": 0,
          "total": 1,
          "unknown": 0
        },
        "label": "COWPY",
        "name": "NFCORE_DEMO:DEMO:COWPY"
      },
      {
        "counts": {
          "aborted": 0,
          "cached": 0,
          "completed": 1,
          "failed": 0,
          "queued": 0,
          "running": 0,
          "total": 1,
          "unknown": 0
        },
        "label": "FASTQC",
        "name": "NFCORE_DEMO:DEMO:FASTQC"
      },
      {
        "counts": {
          "aborted": 0,
          "cached": 0,
          "completed": 1,
          "failed": 0,
          "queued": 0,
          "running": 0,
          "total": 1,
          "unknown": 0
        },
        "label": "MULTIQC",
        "name": "NFCORE_DEMO:DEMO:MULTIQC"
      }
    ],
    "semantic_stages": false
  }
}

SHA-256: 9e32f820c55b110ebe49880be3e11f025abb42393826b69718289dbc8abfa481