CodexPluginStats
← NGS Analysis WorkbenchCONTENT HISTORY

Update to NGS Analysis Workbench

Snapshot Oct 8, 2026 · 00:04 UTC · version 0.2.18

WHAT CHANGED · RULE-BASED ANALYSIS

Package or technical metadata updated

Package contents changed in 50 files: .codex-plugin/plugin.json, .mcp.json, README.md, …. Open the file diff to inspect the edits.

Observed in package metadata. These changes alone do not establish a new customer-facing feature.

Package file

Before

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After

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Package file

Before

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After

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Package file

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1135

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Package file

Before

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After

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Compare saved observations

Download comparison JSON

Changed files

.codex-plugin/plugin.json →

.mcp.json →

README.md →

integrity.json →

mcp/PLUGIN_VENV_VERSION →

mcp/mcp-app.html →

mcp/mcp-inline.html →

mcp/ngs_app_mcp/__main__.py →

mcp/ngs_app_mcp/app.py →

mcp/ngs_compute_mcp/__main__.py →

mcp/ngs_workbench_daemon/persistence/database.py →

mcp/ngs_workbench_daemon/runs.py →

mcp/ngs_workbench_daemon/server.py →

mcp/ngs_workbench_daemon/ssh.py →

mcp/ngs_workbench_mcp/__main__.py →

mcp/ngs_workbench_mcp/app.py →

mcp/ngs_workbench_mcp/approved_execution.py →

mcp/requirements.in →

mcp/requirements.txt →

mcp/rosalind_logging/__init__.py →

mcp/rosalind_logging/mcp.py →

mcp/start_server →

mcp/start_server.cmd →

package-lock.json →

package.json →

scripts/check-release-ci.sh →

src/App.stories.tsx →

src/App.tsx →

src/components/RunHistory.module.css →

src/components/RunHistory.stories.tsx →

src/components/RunHistory.tsx →

src/components/RunHistorySidebar.tsx →

src/design-system/Icon.tsx →

src/design-system/icons/chat-plus.svg →

src/hooks/useNgsWorkbench.ts →

src/inline/RunReviewApp.tsx →

src/inline/client.ts →

src/mcp/client.ts →

src/mcp/ngs.ts →

tests/daemon_test_case.py →

tests/test_daemon_lifecycle.py →

tests/test_mcp_ui.py →

tests/test_nextflow_mcp.py →

tests/test_run_persistence.py →

tests/test_sentry_logging.py →

tests_js/client-logging.test.ts →

tests_js/workflow-catalog.test.ts →

tsconfig.json →

vite.config.ts →

vite.inline.config.ts →

package-lock.json

--- before
+++ after
@@ -11,6 +11,7 @@
       "dependencies": {
         "@base-ui/react": "1.5.0",
         "@modelcontextprotocol/ext-apps": "1.7.1",
+        "@oai/first-party-plugin-bridge": "file:../../../../lib/js/oai_js_first_party_plugin_bridge",
         "react": "19.2.3",
         "react-dom": "19.2.3"
       },
@@ -24,6 +25,19 @@
         "vite-plugin-singlefile": "2.3.3"
       }
     },
+    "../../../../lib/js/oai_js_first_party_plugin_bridge": {
+      "name": "@oai/first-party-plugin-bridge",
+      "version": "0.1.0",
+      "dependencies": {
+        "@modelcontextprotocol/ext-apps": "^1.7.4",
+        "@modelcontextprotocol/sdk": "^1.29.0",
+        "capnweb": "^0.8.0",
+        "zod": "4.3.0"
+      },
+      "devDependencies": {
+        "typescript": "catalog:typescript-5"
+      }
+    },
     "node_modules/@adobe/css-tools": {
       "version": "4.5.0",
       "integrity": "sha512-6OzddxPio9UiWTCemp4N8cYLV2ZN1ncRnV1cVGtve7dhPOtRkleRyx32GQCYSwDYgaHU3USMm84tNsvKzRCa1Q==",
@@ -978,6 +992,10 @@
         "@emnapi/runtime": "^2.0.0-alpha.3"
       }
     },
+    "node_modules/@oai/first-party-plugin-bridge": {
+      "resolved": "../../../../lib/js/oai_js_first_party_plugin_bridge",
+      "link": true
+    },
     "node_modules/@oxc-project/types": {
       "version": "0.133.0",
       "integrity": "sha512-KzkdCd6Uxqnf6l3HOw1xfatAlUURA0g14cvBYFyJ5SaNOQbOUvBr9PKArcPcrNIeRsBdgcUzOGrhKveVpvOIGA==",
@@ -1990,6 +2008,11 @@
         "node": ">=18"
       }
     },
+    "node_modules/capnweb": {
+      "version": "0.8.0",
+      "integrity": "sha512-BK/TuXUiyfLSKsmjojn70yN7oYG/JJzoURZ3tckjg5Zj2KcygPm0A5jyOlswK7SYB4f0Gh9tt+RZ132b80iLfA==",
+      "license": "MIT"
+    },
     "node_modules/check-error": {
       "version": "2.1.3",
       "integrity": "sha512-PAJdDJusoxnwm1VwW07VWwUN1sl7smmC3OKggvndJFadxxDRyFJBX/ggnu/KE4kQAB7a3Dp8f/YXC1FlUprWmA==",
Full technical diff · 92 changed fields

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