Scientific Research Codex plugins

Publisher keywords · listing

sequence alignment msa fasta fastq genbank embl snapgene sanger abif scf a3m stockholm bioinformatics

Publisher keywords · listing

bionemo life-sciences drug-discovery protein-folding molecular-docking generative-chemistry genomics protein-design cuda-x nim

Publisher full description

…e molecular viewer when available, with an agent-generated static rendering as a last resort where local rendering tools are available. Managed inference requires a Biohub API key and may incur usage charges. Predictions support research hypotheses, not experimental conclusions.

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…c region, or a FASTA; it resolves the sequence from Ensembl and returns structured predictions. No local GPU, model weights, or API key required. For research use, not clinical or diagnostic decisions.

Publisher description

…their existing workflow. Through this MCP server, users can access Inductive’s models for the physicochemical properties LogD (lipophilicity) and pKa (acid/base ionization), key drivers of solubility and permeability.

Publisher full description

…, structures, pathways, chemistry, pharmacology, clinical evidence, and public omics datasets. Use focused skills for source-specific lookups or combine a small set of orthogonal databases for evidence-backed research.

Publisher full description

…ed publication records, PMC Open Access availability, and bioRxiv or medRxiv preprints. Use it for focused searches, citation metadata, publication linkage, and source-backed comparisons between preprints and published articles.

Publisher full description

A journey-oriented NGS workbench for FASTQ QC, bulk RNA-seq, and single-cell RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and…

Publisher description

…a deterministic answer to a fundamental question: does at least one feasible state exist within a locally defined reality governed by highly complex dependencies and constraints in a high-dimensional space? Before committing resources to complex computation or a quantum problem, PartnerProf can det…

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…filiate links. The app returns public catalogue data without sign-in and does not place orders or process payments. Prescription-drug analogues are excluded from compound search and comparison. Research use only; no dosing or medical advice.

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…matches, inspect reported testing panels, browse a vendor’s published certificate feed, or compare documented COA coverage across vendors. Results keep laboratory-record confirmation, vendor attribution, product and labeled-strength matching, reported analytical results, and physical-vial chain of c…

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…, and electronic properties with quantum chemistry. Prepare proteins and run structure prediction, docking, molecular dynamics, and binding affinity workflows. Calculations are saved to Rowan and available in the web app, while existing Rowan work can be viewed and managed from ChatGPT. Track jobs,…

Publisher description

…ar science. Validate, estimate, submit, and monitor jobs across 300+ tools — structure prediction, docking, protein and antibody design, molecular dynamics, and property prediction. Chain tools into pipelines, batch many inputs at once, and pull back structures, results, and logs — all from chat.