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Scientific Research Codex plugins

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Scientific Research plugins 19

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Adaptyv BioOpenAIGrounded workflows for preparing, estimating, submitting, and monitoring protein experiments through Adaptyv Bio's hosted MCP server. Plugin name Adaptyv Bio Show in context → 4 more matching sources Package name adaptyv-bio Show in context → Publisher keywords · listing adaptyv-bio life-science protein wet-lab experiments mcp Show in context → Publisher description …workflows for preparing, estimating, submitting, and monitoring protein experiments through Adaptyv Bio's hosted MCP server. Show in context → Publisher full description An OpenAI-authored integration for Adaptyv Bio's hosted MCP server. Estimate and prepare protein experiments, create reviewable drafts, explicitly approve submission and commercial transitions, and monitor status and results without collapsing… Show in context →	Scientific ResearchVersion 0.0.4	View details →
Biohub ESMChan Zuckerberg Biohub, Inc.Understand proteins with ESM: explore mutation landscapes, interpret learned features, predict and view structures, discover relatives, a... Plugin name Biohub ESM Show in context → 5 more matching sources Package name biohub-esm Show in context → Publisher keywords · listing biohub esm esmc esmfold2 esm-atlas protein-language-model mutation-landscape sparse-autoencoder multiple-sequence-alignment structure-prediction protein-design computational-biology modal hugging-face Show in context → Publisher Chan Zuckerberg Biohub, Inc. Show in context → Publisher description …n landscapes, interpret learned features, predict and view structures, discover relatives, and plan binder workflows. Show in context → Publisher full description Biohub ESM helps you understand proteins from a name, sequence, or file: explore mutation landscapes, interpret what ESMC sees, predict and view all-atom structures, and discover related proteins. It… Show in context →	Scientific ResearchVersion 0.2.4	View details →
Biohub ESMChan Zuckerberg Biohub, Inc.Understand proteins with ESM: explore mutation landscapes, interpret learned features, predict and view structures, and discover relatives. Plugin name Biohub ESM Show in context → 4 more matching sources Package name biohub-esm Show in context → Publisher keywords · listing biohub esm esmc esmfold2 esm-atlas protein-language-model mutation-landscape sparse-autoencoder multiple-sequence-alignment structure-prediction computational-biology modal hugging-face Show in context → Publisher Chan Zuckerberg Biohub, Inc. Show in context → Publisher full description Biohub ESM helps you understand proteins from a name, sequence, or file: explore mutation landscapes, interpret what ESMC sees, predict and view all-atom structures, and discover related proteins. It… Show in context →	Scientific ResearchVersion 0.4.3	View details →
Biological Sequence & Alignment ViewerOpenAIInspect, analyze, safely edit, and compare biological sequences and alignments. Plugin name Biological Sequence & Alignment Viewer Show in context → 4 more matching sources Publisher subtitle Inspect, analyze, and compare biological sequences and alignments in Codex. Show in context → Publisher keywords · listing sequence alignment msa fasta fastq genbank embl snapgene sanger abif scf a3m stockholm bioinformatics Show in context → Publisher description Inspect, analyze, safely edit, and compare biological sequences and alignments. Show in context → Publisher full description Biological Sequence & Alignment Viewer helps you inspect, analyze, safely edit, and compare FASTA, GenBank, EMBL, FASTQ, multiple sequence alignments, Sanger ABIF/SCF traces, and supported SnapGene DN… Show in context →	Scientific ResearchVersion 0.1.43	View details →
NVIDIA BioNeMo Agent ToolkitNVIDIA BioNeMoNVIDIA BioNeMo agent skills for life sciences — protein folding, molecular docking, generative chemistry, genomics, protein design, and b... Plugin name NVIDIA BioNeMo Agent Toolkit Show in context → 5 more matching sources Package name bionemo-agent-toolkit Show in context → Publisher subtitle Skills for NVIDIA BioNeMo Show in context → Publisher keywords · listing bionemo life-sciences drug-discovery protein-folding molecular-docking generative-chemistry genomics protein-design cuda-x nim Show in context → Publisher NVIDIA BioNeMo Show in context → Publisher description NVIDIA BioNeMo agent skills for life sciences — protein folding, molecular docking, generative chemistry, genomics, protein design, and biomarker discovery as ready-to-call tools. Show in context →	Scientific ResearchVersion 0.1.0	View details →
Tamarind BioTamarind BioConnect ChatGPT to your Tamarind Bio workspace for protein and molecular science. Validate, estimate, submit, and monitor jobs across 300... Plugin name Tamarind Bio Show in context → 1 more matching sources Publisher description Connect ChatGPT to your Tamarind Bio workspace for protein and molecular science. Validate, estimate, submit, and monitor jobs across 300+ tools — structure prediction, docking, protein and antibody design, molecular dynamics, and pr… Show in context →	Scientific ResearchVersion 1.0.0	View details →
BoltzBoltzPredict structures, screen molecules and proteins, and design binders. Publisher subtitle Predict structures, screen molecules and proteins, and design binders Show in context → 3 more matching sources Publisher keywords · package boltz boltz-api go-cli computational-biology protein-design protein-screening small-molecule-design virtual-screening structure-prediction molecular-modeling drug-discovery biotech Show in context → Publisher description Predict structures, screen molecules and proteins, and design binders. Show in context → Publisher full description Use Boltz from Codex for biomolecular modeling workflows: predict structure and binding for protein, RNA, DNA, and ligand complexes; rank small-molecule or protein libraries against targets; and design novel small molecules,… Show in context →	Scientific ResearchVersion 0.1.1	View details →
Life Sciences LiteratureOpenAIBiomedical literature discovery across PubMed, PMC Open Access, bioRxiv, and medRxiv. Publisher subtitle Find biomedical papers, preprints, and open-access full text Show in context → 3 more matching sources Publisher keywords · listing life-science literature pubmed pmc biorxiv medrxiv preprints Show in context → Publisher description Biomedical literature discovery across PubMed, PMC Open Access, bioRxiv, and medRxiv. Show in context → Publisher full description Helps you discover and summarize biomedical literature using PubMed publication records, PMC Open Access availability, and bioRxiv or medRxiv preprints. Use it for focused searches, citation metadata, publication linkage, and source-… Show in context →	Scientific ResearchVersion 0.1.5	View details →
PartnerProf - Quanntum CorePETR SCHOENPartnerProf is a unique tool that provides a deterministic answer to a fundamental question: does at least one feasible state exist withi... Publisher subtitle Assess state feasibility Show in context →	Scientific ResearchVersion 2.0.4	View details →
ProtoLaboratory of Evolutionary Design, Stanford University and Arc InstituteProto helps users run biological AI and bioinformatics tools, inspect their schemas and examples, run analyses and models, deploy these t... Publisher subtitle Biological AI models and tools Show in context → 1 more matching sources Publisher description Proto helps users run biological AI and bioinformatics tools, inspect their schemas and examples, run analyses and models, deploy these tools to a Modal compute workspace, and collect or fetch stored results through ChatGP… Show in context →	Scientific ResearchVersion 0.0.1	View details →
RowanRowan Scientific CorporationUse Rowan in ChatGPT to run and manage computational chemistry and structural biology workflows. Predict molecular properties, search con... Publisher subtitle Chemistry & Biology Simulation Show in context → 1 more matching sources Publisher description Use Rowan in ChatGPT to run and manage computational chemistry and structural biology workflows. Predict molecular properties, search conformers and reaction paths, and calculate energies, structures, spectra, and electronic properties with quantum chemistry. Prepare proteins a… Show in context →	Scientific ResearchVersion 1.0.1	View details →
Life Sciences DatabasesOpenAIStructured public life-science database research across genetics, omics, biology, chemistry, structure, and clinical evidence. Publisher keywords · listing life-science databases bioinformatics genetics omics proteins chemistry clinical-research Show in context → 2 more matching sources Publisher description Structured public life-science database research across genetics, omics, biology, chemistry, structure, and clinical evidence. Show in context → Publisher full description …clinical evidence, and public omics datasets. Use focused skills for source-specific lookups or combine a small set of orthogonal databases for evidence-backed research. Show in context →	Scientific ResearchVersion 0.1.5	View details →
Molecular Structure ViewerOpenAIQuery, analyze, compare, style, animate, and render molecular structures with revisioned Mol* scenes. Publisher keywords · listing structure pdb cif mmcif mol sdf mol2 pqr pdbqt gro xyz molstar protein ligand molecule bioinformatics rendering alignment animation movie png mp4 density trajectory analysis Show in context →	Scientific ResearchVersion 0.1.90	View details →
NGS Analysis WorkbenchOpenAIJourney-oriented NGS data understanding, scientific analysis design, approval-gated execution, and file-backed result interpretation. Publisher keywords · listing ngs sequencing bioinformatics fastq rnaseq scrnaseq pipeline-routing snakemake nextflow nf-core Show in context → 1 more matching sources Publisher full description …ll RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and interpret completed results from file-backed evidence. Show in context →	Scientific ResearchVersion 0.2.16	View details →
Seq2MusicJacob Michael VoganOffline biological sequence/music conversion with reversible MIDI, WAV, and MusicXML, accessible score notation, and lossy arbitrary-audi... Publisher keywords · listing bioinformatics sonification protein sequence midi Show in context → 1 more matching sources Publisher description Offline biological sequence/music conversion with reversible MIDI, WAV, and MusicXML, accessible score notation, and lossy arbitrary-audio transcription. Show in context →	Scientific ResearchVersion 0.3.2	View details →
Slide ViewerOpenAIExplore whole-slide microscopy, digital pathology, tissue histology, and spatial transcriptomics in an interactive scientific viewer. Publisher keywords · listing …tiff dicom ome-tiff ome-zarr ngff aperio h5ad anndata spatial-transcriptomics spatial-omics spatial-biology gene-expression spatial-gene-expression visium 10x-genomics segmentation annotations overlays clusters spatial-domains geojson cellvit tissue tissue-architecture whole-slide whole-slide-imagin… Show in context → 1 more matching sources Publisher full description …er projects while preserving the original specimen. UI actions have typed agent counterparts; availability depends on the source and host. Read current selections and annotations on demand, and capture the current viewport or a source region for image interpretation. Research use, not clinical diagn… Show in context →	Scientific ResearchVersion 0.1.65	View details →
InductiveInductive BioInductive's absorption, distribution, metabolism, excretion, and toxicity (ADMET) models predict the chemical and pharmacokinetic propert... Publisher Inductive Bio Show in context → 1 more matching sources Publisher description …physicochemical properties LogD (lipophilicity) and pKa (acid/base ionization), key drivers of solubility and permeability. Show in context →	Scientific ResearchVersion 2.0.0	View details →
PendarPendarlabs Publisher description …That is how you tell a paper quietly becoming foundational from one that peaked years ago. Paste a bibliography and it checks each reference against the published record: whether the paper exists, whether the citation describes it accurately, and whether it has been retracted. A reference it cannot… Show in context →	Scientific ResearchVersion 2.0.0	View details →
Rosalind WorkbenchOpenAI Publisher full description …e synthesis, protein and small-molecule design, structure and sequence analysis, safety and developability, experimental validation, and GPT-Rosalind access. Show in context →	Scientific ResearchVersion 0.2.5-research-preview	View details →