Scientific Research Codex plugins

Plugin name

Seq2Music

Publisher keywords · listing

…ogy gene-expression spatial-gene-expression visium 10x-genomics segmentation annotations overlays clusters spatial-domains geojson cellvit tissue tissue-architecture whole-slide whole-slide-imaging wsi region-of-interest viewer

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…create reviewable drafts, explicitly approve submission and commercial transitions, and monitor status and results without collapsing real-world actions into a single step.

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…modified-complex workflows, and private or large-scale compute routing. Supported protein sequences use the Biohub MCP viewer. Complexes and exact prediction files use a separate molecular viewer when available, with an agent-generated static rendering as a last resort where local rendering tools ar…

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Use Boltz from Codex for biomolecular modeling workflows: predict structure and binding for protein, RNA, DNA, and ligand complexes; rank small-molecule or protein libraries against targets; and desig…

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…r sites, enhancer activity, chromatin state, sequence-to-expression, and de-novo gene annotation, plus a composite find-genes-then-predict-expression workflow. Give it a gene symbol, a genomic region, or a FASTA; it resolves the sequence from Ensembl and returns structured predictions. No local GPU,…

Publisher description

…, a one-line note and the studies behind it with their PubMed id, evidence level and retraction status. Verify a new claim live against PubMed and OpenAlex in 20 to 70 seconds. Read a speaker's track record, a show, a topic, a single study, or the money behind it from public funding registers. Sign…

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…ze which molecules to synthesize, without leaving their existing workflow. Through this MCP server, users can access Inductive’s models for the physicochemical properties LogD (lipophilicity) and pKa (acid/base ionization), key drivers of solubility and permeability.

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…teins, structures, pathways, chemistry, pharmacology, clinical evidence, and public omics datasets. Use focused skills for source-specific lookups or combine a small set of orthogonal databases for evidence-backed research.

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Helps you discover and summarize biomedical literature using PubMed publication records, PMC Open Access availability, and bioRxiv or medRxiv preprints. Use it for focused searches, citation metadata, publication linkage, and source-backed comparisons bet…

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…s a compact Select, Analyze, Compare, Related data, Style, Animate, and Export workbench over Mol*. Use one revisioned atom-level query and scene contract across the UI and Codex to measure geometry, browse source-relative molecular companions, inspect contacts and density, compare aligned structure…

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A journey-oriented NGS workbench for FASTQ QC, bulk RNA-seq, and single-cell RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and i…

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…ountries produce them, and which papers to read first. Every figure is counted across the whole corpus rather than estimated from a sample, so you can plan around it. Point it at a paper and it traces what happened next: whether citations are rising or fading, which fields picked the work up, whethe…

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…Filter comparisons by vendors' shipping origin and pack size, or look up a vendor profile. Results use Peptide Critic's Best Value ranking, which favors partners when offers are comparable; returned buy links are tracked affiliate links. The app returns public catalogue data without sign-in and doe…

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Search and inspect public peptide certificates of analysis using the PeptidePrices evidence library and supported laboratory records. Look up exact report identifiers or public certificate URLs, review vendor and compound matches, inspect reported testing pan…

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Proto helps users run biological AI and bioinformatics tools, inspect their schemas and examples, run analyses and models, deploy these tools to a Modal compute workspace, and collect or fetch stored results thro…

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QualiTaTi is an AI-powered qualitative research platform used by academic and UX researchers. This plugin connects ChatGPT and Codex to your QualiTaTi account through a hosted MCP server, so you can run a study end to end without leaving the conversation. W…

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Use Rowan in ChatGPT to run and manage computational chemistry and structural biology workflows. Predict molecular properties, search conformers and reaction paths, and calculate energies, structures,…

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…y - Your uploaded PDFs made available to all chats - Organizes your papers and stores your insights Used by scientists at thousands of institutions, from university labs to pharma R&D teams.