← NGS Analysis WorkbenchSOURCE FILE ARCHIVE
Inside the package
NGS Analysis Workbench · 253 files · 774 KB · Sep 30, 2026 · 23:20 UTC
| File | Size |
|---|---|
.codex-plugin/plugin.jsonSHA-256a32ecaede3ce6d04098191997359900169259682e2b4909200a624fafe2e0ea1 | 1.92 KB |
.gitignoreSHA-256c62033c875ab6c850d1490b0f77cc039dc9e34f8996ea6d08ad730d3653836e7 | 302 Bytes |
.mcp.jsonSHA-256687be5b8b5bdabe59b1ba2101faf3de4cd0728dec59c7867e144cb2be29930fb | 1.11 KB |
.npmrcSHA-2567e057776e6b71571b59bae3d3d37f802925676e1d9ae94cbcb6fd16698619a10 | 37 Bytes |
.storybook/host-theme-fixtures.tsSHA-256ba2341f8bbeae18e76828ebfcdc99478525be7277019d1fa7422c755731076ee | 6.06 KB |
.storybook/main.tsSHA-2564788bf86b77d191b2cb01c24895d79274aa361db4a1bbce4286a4a95b31524db | 435 Bytes |
.storybook/preview.tsxSHA-256de2fd015edb1b6cb2dee1a7be4dff14d8697cb9d5c5ba6f650769c4833c74dc0 | 2.1 KB |
.storybook/storybook.cssSHA-256751d97cd37a88b67190742285ba45a8c5c5118011f03c7010078c123fb870fa5 | 3.86 KB |
.storybook/vite.storybook.config.tsSHA-2560d47288d78f9a853cbf4f7490e760577776159de4eaf4b5f0f9b4366ff1e7cba | 95 Bytes |
ARCHITECTURE.mdSHA-256b0e70b26f85ff71d65b66ceff0fde7c41226141fc5d4d14c369aff6a32990471 | 7.27 KB |
README.mdSHA-256c53b836bd73843d02ce68cd59c69ace56e3f03ebd8e1fe96a77de0c49f6a3763 | 8.83 KB |
assets/app-icon.pngSHA-256de2f5931b97d9b2ce6325208dd514c69ee9bf13201af635d8fb17345a5ef4737 | 38.2 KB |
mcp-app.htmlSHA-256d435b6464ee3c6127f989058f308b3c2192bd54842ccd9e48c5fd62fb5c0a94e | 309 Bytes |
mcp-inline.htmlSHA-256868a24812beb875fabb98256c6266cf38ca5b35b0e96d8f2d3e299fca7533a95 | 308 Bytes |
mcp/PLUGIN_VENV_VERSIONSHA-256283571d2642fc7b3befd294f45d53b896a1d54d34c86235b13151192b380606a | 6 Bytes |
mcp/mcp-app.htmlSHA-256f69bddc07fb496fa7cdf43893b15ca726cd36d196a074c54628e0ca6c0d42f09 | 798 KB |
mcp/mcp-inline.htmlSHA-256cf72868c0c194bfaca422496fb00eee0e94d427a83bc0372a39f8be70c5e9029 | 583 KB |
mcp/ngs_app_mcp/__init__.pySHA-256ceddffabdd73731bc39ab3cdb2e352998721a8da09efb8cd87f73f30d6e3c1b0 | 52 Bytes |
mcp/ngs_app_mcp/__main__.pySHA-25680d790ef877ec7dde109d75e2343c4b15e8c9f24e3027623874eaa2e0a95f9db | 168 Bytes |
mcp/ngs_app_mcp/app.pySHA-25660c39e75a4e6839127e342742251da6753ee22dcb311ac9d44726d97a5e55f19 | 6.24 KB |
mcp/ngs_compute_mcp/README.mdSHA-2567917e105aaba29183ab3aef8110116cea8fb7124641f79dace12c1177d7fccf2 | 2.39 KB |
mcp/ngs_compute_mcp/__init__.pySHA-256a873adc400e83fc6e5fa200f108d16baf513c2a4805d8e3e24b1b8862d56dd2c | 83 Bytes |
mcp/ngs_compute_mcp/__main__.pySHA-2562ea373ef777bdf8e63a859bbbbd999f17d8eb57773e2936f225eb2b0e86354b0 | 3.4 KB |
mcp/ngs_workbench_daemon/__init__.pySHA-25660e255abf895676c5d5e925cd3079666e68eb3f68c0218c5ff84632d389fbffe | 74 Bytes |
mcp/ngs_workbench_daemon/__main__.pySHA-256463afdbcce585383708ea36bf15390e89049352daa2f6a8b8de70e21c4064ed8 | 105 Bytes |
mcp/ngs_workbench_daemon/client.pySHA-25688f41f63dc114d0880f482eac6c7cb6b65be8aa9ed276f74fdfe73480fd59a91 | 8.31 KB |
mcp/ngs_workbench_daemon/hashing.pySHA-256794d06949648ca30256670638f309f1b5db149a85e18474cc20103ec29dc2f0a | 2.52 KB |
mcp/ngs_workbench_daemon/input_files.pySHA-2560290491a1fb827eb99f9c459f2405de2f5df7d2ed4d862232367cc7f80fe90ce | 5.52 KB |
mcp/ngs_workbench_daemon/inspection.pySHA-256e298a6507fa97b4f4317554d3c9d4e0c57fb77eee437c355e92d372cd06a4eaf | 3.19 KB |
mcp/ngs_workbench_daemon/persistence/__init__.pySHA-2569a76605ace517f17108f0458b2f12f16392f1ac6af5e2e6060c400ed58c5d0f7 | 801 Bytes |
mcp/ngs_workbench_daemon/persistence/database.pySHA-256425e0447610e20f6e70d3affe641727bc97ee25a28e514ca311034d946959c8c | 3.24 KB |
mcp/ngs_workbench_daemon/persistence/migrations/env.pySHA-256f61a77a8e69618d1f3cdc876827764587361178bc62b9a9da0466995d155c73b | 1.16 KB |
mcp/ngs_workbench_daemon/persistence/migrations/versions/0001_initial_registry.pySHA-2568d703d68905cdb9854904719aba00993fe94e618e7a52fbed0ef967e78e81d69 | 4.87 KB |
mcp/ngs_workbench_daemon/persistence/migrations/versions/0002_saved_workflows.pySHA-256299cc122dc4aec7343cbd7f8a1a0a3cdb2a015a5cd85428ec94b835bbd7e1c38 | 1.5 KB |
mcp/ngs_workbench_daemon/persistence/migrations/versions/0003_run_recovery_lineage.pySHA-256427e17f30a5894f79b5567998bf9a61f9bd95b7c8cc392a1274d59362b09f630 | 3.27 KB |
mcp/ngs_workbench_daemon/persistence/migrations/versions/0004_workflow_versions.pySHA-256dff3d67eebef940f013dc7e12ecd54b6589708ea0674086e6a586ed06e9f67ad | 3.57 KB |
mcp/ngs_workbench_daemon/persistence/orm.pySHA-256006bb11b30d0238944dc0d606b8fcfb0c365db0ee2ab93ed384400d3f98b4441 | 6.96 KB |
mcp/ngs_workbench_daemon/persistence/paths.pySHA-256cdfee5139d27d50bcdad2795327e9166977ce09207abf7cc3c9c8717620083a1 | 3.52 KB |
mcp/ngs_workbench_daemon/persistence/repository.pySHA-2564c7bcde7d119f7522dd95e88e2963321e816f72755a0fdd758d960096fdc4fe0 | 18 KB |
mcp/ngs_workbench_daemon/persistence/unit_of_work.pySHA-256a9d14d9b679be9c28c3772382976c98f2fee85fd0a46214fe13b0f4b2ff6e30c | 2.08 KB |
mcp/ngs_workbench_daemon/persistence/workflows.pySHA-2567e2437bf16c110babc0ea0d380bd5a1b21f119e05d4fe8df31f222c2d6cd6905 | 6.46 KB |
mcp/ngs_workbench_daemon/protocol.pySHA-25618526d00b4a65df57c1b4e13a21213f9d1c054e542390439b5766c0199fcb2ef | 8.71 KB |
mcp/ngs_workbench_daemon/remote_controller.pySHA-256302efd8345b5c3ed30e6a1b04eda6b25db793bb8a814d3569d258177f47b7ee4 | 712 Bytes |
mcp/ngs_workbench_daemon/remote_operations.pySHA-256a4ba212180447040884007cb4debb38ebae3327102ea67251df6be82a285aad9 | 6.75 KB |
mcp/ngs_workbench_daemon/remote_probe.pySHA-25628ad7e11e85964e32fde5dceee10c3a2cf0e38afc6271d2e7d003c9b20eccdb0 | 9.8 KB |
mcp/ngs_workbench_daemon/runs.pySHA-2567196471df56e194a6297f83106cf1b8896d4df52b79a996667ca6511fe547a47 | 41.7 KB |
mcp/ngs_workbench_daemon/server.pySHA-256dbc11c58207fc88f3b94a1733427834632a3617d89d8c5dd9948ccbe2ec37495 | 10.8 KB |
mcp/ngs_workbench_daemon/ssh.pySHA-25615d1435dbc1b9dd1393fcb4506d5f23f3616aa428f0aa579c3dd5edac390f0ca | 11.3 KB |
mcp/ngs_workbench_daemon/state.pySHA-25624c208bf87719532bfdc82d143506b0dc0faf492d280cb5c7993ded3a21abff2 | 4.78 KB |
mcp/ngs_workbench_execution_monitoring/__init__.pySHA-2566909a497ddb89aa798f0b5fecabf87a831d8c0052850e6d2beada59de8a8ce62 | 328 Bytes |
mcp/ngs_workbench_execution_monitoring/base.pySHA-256f8adeea1ccf37669cce3ac1f38b64c5ae22128e07e8cad24c791c4dec7adc623 | 493 Bytes |
mcp/ngs_workbench_execution_monitoring/models.pySHA-256b17adfed730154997cf9767378d1fd95034b0384dc0c6be9527b819afe2c6bcd | 4.97 KB |
mcp/ngs_workbench_execution_monitoring/nextflow_trace.pySHA-25656f37ed6e2c8c3597c2002d9b49c03b927b61ba90322fe2e0d3d1bb49d8ed752 | 7.55 KB |
mcp/ngs_workbench_execution_monitoring/registry.pySHA-25655c75b2adda56b335ff114ccc33d14f9fd0f59e2faeae8805bbeb5cae6c279c2 | 2.01 KB |
mcp/ngs_workbench_execution_monitoring/snakemake_log.pySHA-256a0b5e4d58fde67e3583784e38375b23b134325d3b84deb3e4dc7cd6d63c11d84 | 9.54 KB |
mcp/ngs_workbench_mcp/__init__.pySHA-25644a4f276ca3c2d5791ff057c3d7dad00f52f37f1a065f934bcd29d3e6c341d67 | 66 Bytes |
mcp/ngs_workbench_mcp/__main__.pySHA-25661a83c839139eac11782e8cdd6640b55b4edd91737c39af499dfdb965daca902 | 277 Bytes |
mcp/ngs_workbench_mcp/app.pySHA-2566b8c4ca320582112d94c6bbc59744ab893c69814953862b95d05582ea5ae29aa | 25.9 KB |
mcp/ngs_workbench_mcp/approved_execution.pySHA-256f475a8ea8d571708b3e850cb57091ca862546fbad181fe91e3b8adf0db25fa38 | 3.18 KB |
mcp/ngs_workbench_mcp/compute_targets.pySHA-256f53f8d02c6220489f22ed9c8239409c17fdda328881c74f5ea3f44edd3cb0682 | 2.18 KB |
mcp/ngs_workbench_mcp/fastq_inputs.pySHA-256fb5fc079129974f07384135840fcf54cbd910721299e4280ef274a329f7c2345 | 7.28 KB |
mcp/ngs_workbench_mcp/json_io.pySHA-256642014740a38e68d28a0e0dff95e99d17179df3e8f98c1edb884b6903a7c3528 | 826 Bytes |
mcp/ngs_workbench_mcp/plan_registry.pySHA-256d18d0fd89f9027b6be0d350c80f99237afb64dc667e7bcdab4a0770ae48a531f | 6.41 KB |
mcp/ngs_workbench_mcp/plans.pySHA-2562d6219378c355c265877c4b50eb0073d023aa782e36e0ef2ee6c02a2ac9a8cba | 9.44 KB |
mcp/ngs_workbench_mcp/preparation.pySHA-256908c5a519cc874d62c81dfb7d35cebcb3995eab5236671cea688d02c0a7440f5 | 8.38 KB |
mcp/ngs_workbench_mcp/readiness/__init__.pySHA-25683b5391510297758c55dbb33ad5f75407db703ac78841b57ebdea22ca9d72882 | 133 Bytes |
mcp/ngs_workbench_mcp/readiness/evaluate.pySHA-256be1eb7427be0b3952496dfc515d0df66121e96489b40a6b22992fb285f98462e | 11.2 KB |
mcp/ngs_workbench_mcp/readiness/models.pySHA-256c5c60069531f81906aea166c76ddbf3eb9b37f65410fba376ba9688106773527 | 3.67 KB |
mcp/ngs_workbench_mcp/readiness_service.pySHA-256a094408107f167a90102a16c7ed28421a181329b402555e482506186fa9fbf60 | 1.84 KB |
mcp/ngs_workbench_mcp/report/__init__.pySHA-256ca6f48dae1128b858f928dc0fb9ef4ffb39848ca627b53632b75c50e2c81bf36 | 362 Bytes |
mcp/ngs_workbench_mcp/report/artifacts.pySHA-256c31956c99a867e5404d66a4608fba05ed4b988f33667ce93f324c000899547cf | 8.45 KB |
mcp/ngs_workbench_mcp/report/builder.pySHA-2562268c0f013adb90ee6aa2dd2080996c7ba73f9f78e181868bd2c45e5d09d068d | 14.6 KB |
mcp/ngs_workbench_mcp/report/files.pySHA-2565510101578ea15fe40a437f8f7dda079dbd8944a507631029a8275d80ec9e177 | 1.56 KB |
mcp/ngs_workbench_mcp/runs.pySHA-25609a2ca4c1e75b01739fcdc208564c0a64804ee33f3dc68a6b0d5e468925eddaa | 20 KB |
mcp/ngs_workbench_mcp/runtime/__init__.pySHA-256de0673c6398ec551aaa191853b30c05aa21445ccba84dde324214e8a982cbf4e | 331 Bytes |
mcp/ngs_workbench_mcp/runtime/local.pySHA-256cb8485b9fa77f55587a0c348f2690ff76616d55bce785947a3c4e959348b5604 | 41.1 KB |
mcp/ngs_workbench_mcp/runtime/models.pySHA-2562e4f4b4c155d10ab9fcb86d1c83791cdc724e461128dab6a100aa3623f4e7c31 | 4.33 KB |
mcp/ngs_workbench_mcp/snakemake.pySHA-2567cc8026e284112abdd0fc72f9088adca9bed7d017839e83909ed2a5388279cb8 | 502 Bytes |
mcp/ngs_workbench_mcp/ui.pySHA-256cdf6e249f8be3707a859073345f383ae1fed144c5c2c1e435e5f6618f969b397 | 2.99 KB |
mcp/ngs_workbench_mcp/workflows/__init__.pySHA-256b2b1ddadfd4bff8a0ed01ac19c3164e0f5bf6d0906f66c04a375402a12d6ab5d | 68 Bytes |
mcp/ngs_workbench_mcp/workflows/catalog_store.pySHA-256fbd2c97a77afddc017d8725966aa3af9d417d5451150f40e58f82fc94656bdc7 | 12.2 KB |
mcp/ngs_workbench_mcp/workflows/defaults.pySHA-2567e7ade2d8f4c83c9dcca24f7213f016ba3a8efec5003b3ccbf46d4caaef8108f | 5 KB |
mcp/ngs_workbench_mcp/workflows/nextflow.pySHA-256f0e1108a123bb4905e9eb9d1ad546133998bf1fb649be4471b763aca851323f5 | 40.8 KB |
mcp/ngs_workbench_mcp/workflows/remote.pySHA-2567fcedf679eeb0a83c40afcf2674fa07f3413c94ce7ba11d50d882b947d46cfb6 | 907 Bytes |
mcp/ngs_workbench_mcp/workflows/resolution.pySHA-256aad438fb579dd4813312a16daebeb119ace620bb6ec426114e98f1cd71f7dabd | 1.84 KB |
mcp/ngs_workbench_mcp/workflows/snakemake.pySHA-256d961d3ab1ce75f541daa1120900194cab5a667f6fb1e2da1bbf3b8a1dcd06a6d | 18.8 KB |
mcp/ngs_workbench_mcp/workflows/source.pySHA-2567a9e4b49d5b6aec9c119f93603e68f3d863c6c4fde71c2b9a9e66f41d60c1071 | 1.74 KB |
mcp/requirements.txtSHA-256366c7d2657a2b7f705d13154ead039f5c40f314d7c5cf58de7f14d563f1f2929 | 81 Bytes |
mcp/start_serverSHA-256843b56dbf6e57c9078606dca8bbce52d87c0ff0b1a393938e7a52f35258998b7 | 3.75 KB |
mcp/start_server.cmdSHA-2561a998fb8abcf9859270190ae6a1624315159c9729871109d5c478a16880831cd | 5.77 KB |
package-lock.jsonSHA-2561709564ae00740604ab814b6465656f33c2b70ef272297ebdf5176e9efb4829a | 129 KB |
package.jsonSHA-2569f3a0e30691f467d0c1a3a0fecd4b5e062221c5a390836c58cc3bade6693e12f | 1.23 KB |
references/analysis-context.mdSHA-256e420afe55caf130787d15da562b860f07ded89fb730f983e1dab4a8d7246cd55 | 1.44 KB |
references/bcl-demultiplexing.mdSHA-256ad53e901d9ab771cfee67a07b457fa1ed41be012daf358f6583a0a1eaf66bf76 | 1.95 KB |
references/bulk-rnaseq.mdSHA-256b8a7a96ebd0a117722faa967bb6117d820f72f45ad366321c1f535e25be408b0 | 4.5 KB |
references/default-workflows.jsonSHA-256bad14858ab87510e940cc1f81ebec3f17cb1fdf5f9794833c81d7aa6cbcb610b | 3.77 KB |
references/dna-variants.mdSHA-256410b4fe721b4c5f0e229b93cc48f4b36e7d183c28c495f014749693d4b5f9bc8 | 2.62 KB |
references/epigenomics.mdSHA-2566b21452abeefe666befeb65fa66ce2de0505c14486cd1289b3c32a140c912d71 | 2.28 KB |
references/fastq-qc.mdSHA-25651c7a98d39559606b21d531fe5d4febbccabd811cf0073663c031aaff244d252 | 2.2 KB |
references/microbiome.mdSHA-25604dbb4767fd9d9c4eceb1f2c6abd3fc90c48aefa8318f19be83501d62b00d974 | 2.57 KB |
references/single-cell-qc-annotation-umap-heuristics.mdSHA-256dbdd9452d4e25d872933c71ab3b62a6650d6f32880e467d5b6ba79d497a03c27 | 9.11 KB |
references/single-cell-rnaseq.mdSHA-2564f45e84a40e3c0ba33a9307e41702d692544e8f171f9f2aef742fa99147bbe33 | 5.01 KB |
scripts/check-package-lock.mjsSHA-256bb873d93b3de1a8210ab05a04c44617d963fd12fb7affadebd81618a9e3c95a7 | 827 Bytes |
scripts/check-release-artifacts.mjsSHA-256a95d7269b7c1515e03b3d3ea2e58c6aea3510f45448960f5ca6c1787e103f01a | 1.71 KB |
scripts/check-release-ci.shSHA-2568fbd003fec1c0ac9ea5567524465e4daa34b90a0709019f5cc6bb1b40ae4d5f4 | 1.38 KB |
skills/design-ngs-analysis/SKILL.mdSHA-256fb2c6609b47572a8ad29f0fdc189989376fedc984c323613bb36b3f6e333c5cd | 3.14 KB |
skills/design-ngs-analysis/agents/openai.yamlSHA-256e74e564e191dc76cba5cbe7ce0e30ad3a35cdd39316ca88adef2f3434b5a7894 | 299 Bytes |
skills/ngs-analysis-workbench/SKILL.mdSHA-256ce2dd71e32c7cafb2906884635e88a019ebb4544e602cc145c87d83bc134a1e4 | 2.3 KB |
skills/ngs-analysis-workbench/agents/openai.yamlSHA-256d0cca5468a24c5b7a3626b53f4965d935bb62fbd48994b8ec99072c702e494ef | 262 Bytes |
skills/ngs-analysis-workbench/references/guided-entry.mdSHA-256269e80e7372f0a29ce82423d34060e11c8eec2e1f400e61b7eee0672bee900a0 | 2.09 KB |
skills/run-ngs-analysis/SKILL.mdSHA-256fb5e48c66f4557858ae67d440d1046771cd74b961f31be267d79be16bf83d99d | 9 KB |
skills/run-ngs-analysis/agents/openai.yamlSHA-256ed6ada7e34deb501dacb109fe99729c1a41657cbcddc8aeb4df0857a2f66ec94 | 276 Bytes |
skills/run-ngs-analysis/references/nfcore-profile-selection.mdSHA-256daac111cfe1afdc4c03df29a0e3b03212fbacc58f970a108c45842529836e39a | 2.71 KB |
skills/run-ngs-analysis/references/runtime-readiness.mdSHA-25683546ce700b9bb71a433b4ee4480b4c847f3eb2cdc7332c3928e46e131ce9bc1 | 2.96 KB |
skills/understand-ngs-data/SKILL.mdSHA-256cc047c57fa41d11ceb64b21e3a44ba0e69cf07d3829280d08f79b7e59863e215 | 2.8 KB |
skills/understand-ngs-data/agents/openai.yamlSHA-2565886ebe518033d9a341718055ccc8b76e21b2c65cbc162edc0cf225e4a6c7cf0 | 285 Bytes |
skills/understand-ngs-results/SKILL.mdSHA-25668b60db1155b7357770e5ff8113271f6d77ad21dcd8c1e2a89536380e0cb9e73 | 11.6 KB |
skills/understand-ngs-results/agents/openai.yamlSHA-2568c3ddbe4983b6e85de9b9dad57adb620f8fcb780de6d8bcc7f91ddddd82403bf | 285 Bytes |
skills/understand-ngs-results/references/analysis-summary.mdSHA-2568754f7f0b7a9dd5e2ec765a73e65947a61f5b0b05e2567d71201eed89ea4ee38 | 3.92 KB |
src/App.module.cssSHA-2562eb634338ad38ea5c3e4cbabcf52212996971ee0ab7cd512a85706b24d832608 | 5.7 KB |
src/App.stories.tsxSHA-25663fa0d2fd3cb80fda799aa8fb217f5dbcb1e31d537acab336d7b346d7ec61873 | 54.8 KB |
src/App.tsxSHA-256f6b42382d8ca1f1a71a8a8304b4f67fe1d097e6e9d8aab7341c71032eed974bc | 14.7 KB |
src/analysisSummary.tsSHA-256e12007bfd0556c55aa210086e8b7a9c20bf0045531815e4bb28ca3499cc13bb0 | 1.4 KB |
src/components/AnalysisSummaryPrompt.tsxSHA-2563eda87e6697cb9cc97d1b628c9be5d0a341e94f9e6f3f7cc95c1098105ee8d9b | 1.33 KB |
src/components/ComputeTargetCatalog.module.cssSHA-256ae00506d137984c72d30a47cf61320032df1cd843226df2913ace63de95c6a4f | 3.18 KB |
src/components/ComputeTargetCatalog.tsxSHA-256ec4e2948d347a433d9627a330021c471dab02d23ec9480878147ba3c369bf1ef | 5.28 KB |
src/components/CopyButton.tsxSHA-256e4ee4cefb686814e8391d5b0cc6551d5bfb2d686b8bb6eb7791a27763ad78d36 | 1.08 KB |
src/components/ExecutionObservationPanel.module.cssSHA-25644a8db216777a82ac3a6277ecdbaec606b3170a7f1629c9a0cfe9c57173fa44f | 6.48 KB |
src/components/ExecutionObservationPanel.stories.tsxSHA-256b2aafcf211c81403b2ec1c226b3e3bdd1d29a70c1b02fd19e3a054079e9907d2 | 5.58 KB |
src/components/ExecutionObservationPanel.tsxSHA-256db699fda12aaef736930e32febd095cb0dd1e340438e58d9ef51c7994cb981f6 | 10.4 KB |
src/components/PipelineCatalog.module.cssSHA-256ab1e97efe683f977270f9d4e893e666a541e3050aab831490f7a1371c44844b0 | 3.6 KB |
src/components/PipelineCatalog.tsxSHA-256f71f6613927d4030e09ce67b701e32ee52d05c094f3efad2bd7c2d18b652b5c5 | 6.72 KB |
src/components/RunHistory.module.cssSHA-256bf9bbcaa0b03b0c3865b9c0b2b0293001899fef0ff34a4b390e37cba8a38101e | 3.24 KB |
src/components/RunHistory.stories.tsxSHA-256a9340a913f1ff51e7802f32db0adf7abf20193fd87a88f9baf3c03fb1d7b1407 | 3.81 KB |
src/components/RunHistory.tsxSHA-2563d7b8f8d06476c0d1fa65419c013222226af851f02bb0932f244c83c0e3f0f2d | 5.83 KB |
src/components/RunHistorySidebar.module.cssSHA-2565ad773399311de1fd6c972084f6ae848b229993290dd098cb03ac3a00f71f01c | 5.79 KB |
src/components/RunHistorySidebar.tsxSHA-2569db1386c372f76569ff14289502a7d5471452d8902a80509e2551c8ab3d646f6 | 13.5 KB |
src/components/RunStatus.module.cssSHA-256f3276ab4476c323898e2a689a4fc8f0f4dbef88154e231eba60da7187ea3472a | 2.85 KB |
src/components/RunStatus.tsxSHA-2560402b2c3ec93a5f70e60d1037a10da5524fed2f58951813bfdfcbc794e01e7d0 | 7.34 KB |
src/design-system/Chip.module.cssSHA-256347fc813db58e4ed77754bf226df425fc8f153bf51689f2574de8f21c50a1679 | 856 Bytes |
src/design-system/Chip.tsxSHA-25674b677d8cc553b3b8006f3ca043ad1c5c60227571e351ef51efcbe8e1fc655ee | 867 Bytes |
src/design-system/DisclosureSummary.tsxSHA-256145d23a33e6e205eba3443148a55f97b4a3db46e32dbe82dfe7f5c6f953e00c8 | 587 Bytes |
src/design-system/Icon.tsxSHA-25622ee71a10dbeb9ed7649d1536175e8db0990a785a4ffb1d52ff8f1c5fade680b | 2.62 KB |
src/design-system/README.mdSHA-2561973f99a89ac26091ab1d8833524c9f3a8e9c34b5938f76ef2bb20bd3a90884d | 9.27 KB |
src/design-system/TooltipIconButton.module.cssSHA-2564546ed807066c9a155db7b8d31cda77f3820a2a80cdcbefa8abc4f78c5590b63 | 624 Bytes |
src/design-system/TooltipIconButton.tsxSHA-256b9791af7c8af606d57b4f6351e661f01d84ade7861bbd3037c266546f6dd4280 | 1.82 KB |
src/design-system/icons/arrow-left.svgSHA-25628beb521d5556baaf3400b4199b416bcf02e094dd4f68c6718d1221e862f9460 | 664 Bytes |
src/design-system/icons/arrow-top-right-sm-thin.svgSHA-2560feb8ce429bffc0eb10f3635b1017b93d9a66eceed89597d07cf734547ab9daa | 576 Bytes |
src/design-system/icons/bar-chart.svgSHA-256865db328d3aa1adc2e48f24075fdd058b42a1f55a7478933de5259ab2956f04f | 1.12 KB |
src/design-system/icons/building-blocks.svgSHA-256b2c90e3e9c3b167463ca5ae549888cdf39b8338016be3c1e1fa1acd37ddb0f8b | 722 Bytes |
src/design-system/icons/check-md.svgSHA-2569b2e0105bc740878f0459212ce28ea7b5a33dab717af2fdc64e05ab69751eb96 | 587 Bytes |
src/design-system/icons/chevron-down-sm.svgSHA-256ba379249b1d9e34b61bce1ad24b29c653696936d788d76cf4549a0ca771ae372 | 524 Bytes |
src/design-system/icons/chevron-right-sm.svgSHA-256d3876be5f0affb893929afd3455f6c25913bafc912986c8dbc4d0daa86374ee8 | 509 Bytes |
src/design-system/icons/close-medium.svgSHA-25630127c1260a87f2323b2e3b5aad02da6c1a0501343ffd089f61d58cf3ba05d74 | 684 Bytes |
src/design-system/icons/close-small.svgSHA-2565ed5dea467dc8f02cb9d95627d300af8e9e1c7ddac1a117e3d37978732bd7acf | 717 Bytes |
src/design-system/icons/copy.svgSHA-256ce35441b3c8b98cb51a73b3720cf970a2f707aa629cba1a9a8e36c0901e92afb | 3.88 KB |
src/design-system/icons/info-sm.svgSHA-256f0ee9895ba84ba880a78e49f8cb1b9d3e4f766e5a85e0dcd302502c7b4a73878 | 951 Bytes |
src/design-system/icons/menu.svgSHA-25638e54b78385c939e3ff50e5e9e3b6638cd90557df082c4b5cb4920459b03691e | 670 Bytes |
src/design-system/icons/provenance.jsonSHA-25670b3fbb990047590a565d3028d8206ff5c33f3337f97156c809c45a1ab18b779 | 2.1 KB |
src/design-system/icons/regenerate.svgSHA-256770fb09081f3ded793b2b5e553d4a254475a258c02e49f87fe70fa464b739a24 | 1.39 KB |
src/design-system/icons/spinner.svgSHA-2564944fe99bc384e860ae3eff2a426727fab23d6f39e4efd2a24b693489a97f5bf | 518 Bytes |
src/design-system/icons/square-grid.svgSHA-256a6ce99986d6f2abafa404c0d3014700599d7459614ac64d8565a29dca832e9c3 | 2.02 KB |
src/design-system/icons/upload-documents.svgSHA-2566e8e3f29d8277ed6df2c4c75a3adfc6144ca522812ee041d0d3c5cc31df6da1b | 2.74 KB |
src/design-system/motion.cssSHA-25601387f0c00db0567aea0b4f3cf3a0065d737c9eef96213baed9f06252b04aaf1 | 1.38 KB |
src/design-system/tokens.cssSHA-256692fe3d50d2beb7f27a51104c5d53fc53853a977af9ccc95d4668abd5ceba615 | 701 Bytes |
src/design-system/useDialogMotion.tsSHA-256e1bd6934a945a37500b69faa9c7565b61e41a80d6b9b1463b8e8bf73543ecd09 | 1.51 KB |
src/execution-observation.tsSHA-25661a4a10f724702da506c0cfffc57b6daaf08f71c4b1c722cb3d54e3eb4d550d7 | 4.7 KB |
src/fixtures/executionObservation.tsSHA-256afb9f6d234f193893940cb88f061718459e34be883161b56db5ffc499fdf02fa | 3.93 KB |
src/hooks/useNgsWorkbench.tsSHA-2564af74063e9260f1e736ab1a0ae9c04b937f9d8c7c3718c8c1ca6b4c035a8ed9c | 12.5 KB |
src/inline-main.tsxSHA-256dbe787d3e6c279158d1ac36c1eeb7b2920a0e93d259205c5d2c4efdb2c42a845 | 261 Bytes |
src/inline/RunReviewApp.module.cssSHA-256dc8111b0516eb22ada9c57603a3c435c358376787ae4b18842616ea9e8532938 | 8.89 KB |
src/inline/RunReviewApp.stories.tsxSHA-256b43c003f78bb8e0f51db4680d8e73617c8650e261bfaf98b7731f56a14f42989 | 18.8 KB |
src/inline/RunReviewApp.tsxSHA-256208182c4df182e3a502d0f7b8f5023fb0bfeb1fd70207ab6fa7d897b8c8b71e2 | 27.1 KB |
src/inline/client.tsSHA-2566f7d120c322ad98c1bae03b2b03c19d41b5f621b3bba777f1a0a295accfcfbc7 | 3.23 KB |
src/inline/types.tsSHA-256472ebb029c0c719665e977dabfb5e1ca02e04e9ebbc43e2aedf7a91edd062f6d | 13.1 KB |
src/main.tsxSHA-256e946a9f6836222ac728ff49d89fd5df7aad099f72bc1425889e3e36910eb4369 | 388 Bytes |
src/mcp/client.tsSHA-256a40b78bc111df79965e258ed8886a7d6136e927471a44ccf2c827a299f90fa60 | 2.59 KB |
src/mcp/ngs.tsSHA-256b78f4e889b0a3ea3a857ed1c7e05d063553e0f3f24431bf4ad0f7475c28e2181 | 8.89 KB |
src/model.tsSHA-256503f84cd9a28949e7b34d3fe5c096dab4ba679ab81cf0ef3c006a94803efb71a | 4.5 KB |
src/report/AnalysisReport.module.cssSHA-256dd0effa4cc11ed4f20201d38f1c5a30f3a06de72a6819e1fb77ee51a3d1b2fda | 8.39 KB |
src/report/AnalysisReport.tsxSHA-2561fbbb90f270223848cd2240204ad097775ad96fb2871793223b247ffce57c88d | 1.67 KB |
src/report/ReportArtifactRow.tsxSHA-2565e51009774cc344dcc5d855ac2c29b2d95f713d058eb813b7bc3aeb3a20c0234 | 2.05 KB |
src/report/ReportArtifacts.tsxSHA-2567f314a6e3586f8b2c9d7713e5ea6ac246b5c83d5a8ad17b23ecca80916088fa9 | 1.8 KB |
src/report/ReportDetails.tsxSHA-2560dee8d964463066934635e09844949440bde0dc3f5867bd54309335ca42b0a15 | 4.46 KB |
src/report/ReportHeader.tsxSHA-256d104c5b3e0cbf8c7a8b5a0e2d7799591be201d988a4d232b992d654853daa3ef | 1.86 KB |
src/report/ReportNarrative.tsxSHA-256f278be2f3f4245e44d02b8ddbe57ba985ed817640997cbbb878b86a3d7b252b2 | 1.34 KB |
src/report/format.tsSHA-2567040288f40c3a972e575e028dcf0c9b995701b3a27a5ec23a878fdd674887781 | 1.3 KB |
src/report/index.tsSHA-256a1c9a7853678823c0502c6dcb33c1525d2986387608f77da7ff01258ea8e9fe2 | 216 Bytes |
src/report/parse.tsSHA-256d2ce350bd6f94dc479f4e48ec204c73f23d86deff56cdc4d420d38ddcbb0f8dd | 5.15 KB |
src/report/types.tsSHA-256e31d27fbe194fda76052e8a4a3962da07976a57c8dd6c96fca18bdecee45f54d | 868 Bytes |
src/runRefresh.tsSHA-256025c13c2cc4b6680b7f2d0b3218c681100c5afc8d03c31b9a7080a20e995fc1c | 947 Bytes |
src/runStatus.tsSHA-256a7e7345b0e3ce4629c0e34f182b5600b0069098c1c0a55c75886ec1f1e97ccc6 | 1.62 KB |
src/styles/base.cssSHA-256c99e90b349168e6866b67c5d56790223e6d91e07e94268079933ceadd2d2a64f | 2.32 KB |
src/styles/inline.cssSHA-25647bd1e56feee5955ef59c95e1a59bd5fe5d5902a1912c0a763f3fc216ab46345 | 102 Bytes |
src/styles/theme.cssSHA-2563992d29b9db4c173648106038faa01d00bc82ee04cb1ebad86b614b14e236f20 | 5.18 KB |
src/styles/ui.module.cssSHA-2560e242cde2ab423e9693d18d6991b3ad327addb8b2318115d26781570c1de10f2 | 2.58 KB |
src/vite-env.d.tsSHA-25665996936fbb042915f7b74a200fcdde7e410f32a669b1ab9597cfaa4b0faddb5 | 38 Bytes |
tests/daemon_test_case.pySHA-25635287f31d6a76214919c98d14b4d65136c3017d6acd509a4341a60576982aa0b | 2.96 KB |
tests/fixtures/execution_observation/README.mdSHA-2569f2a03bd32950a6a31b6c7b3eb73a948f2460cb1871f96d595b2b389558caa4a | 1.16 KB |
tests/fixtures/execution_observation/fixture_manifest.jsonSHA-2560b91a49d3ef12c2922a0af594da45b5202e9e1a1bd6005815b665883241e5730 | 989 Bytes |
tests/fixtures/execution_observation/goldens/nextflow.jsonSHA-2569e32f820c55b110ebe49880be3e11f025abb42393826b69718289dbc8abfa481 | 3.52 KB |
tests/fixtures/execution_observation/goldens/snakemake.jsonSHA-256182d126195956a1fc4e852613e7f24129c93a940d4b4a4af1e89f2b44c01d3df | 4 KB |
tests/fixtures/execution_observation/nextflow/workflow/trace.txtSHA-2561b949485a35a825f55d904fdf1c624ec4233d325d8336c451d546ce2d3197e20 | 504 Bytes |
tests/fixtures/execution_observation/snakemake/results/.snakemake/log/2026-08-07T180851.803407.snakemake.logSHA-256d95c965a54ab3de78e32ea86f60204db9095068dd27a587bb7b2192c7e157b71 | 4.48 KB |
tests/test_compute_mcp.pySHA-2563e67aa81dd1893b00c7bc60c16205601803e68286bff96b9740d0a0e80b2f1c2 | 4.55 KB |
tests/test_daemon_lifecycle.pySHA-256a43bb9d13d0a5da3cf8e5ecc81b26fe0e42a094e304597ad0d8581cdd068f263 | 54.9 KB |
tests/test_execution_observation.pySHA-2565170478ae1e0e5ecac35b558d75cfd1af7fa134478c1937ec22c0ced41575968 | 11 KB |
tests/test_execution_observation_golden.pySHA-256a437b9a2b74edc4264f5175eb5bfb665f2aed5c9afaef1bded784619647e6e45 | 3.14 KB |
tests/test_mcp_ui.pySHA-256a8c928520f921c9c7741f2ec2e0578ed57f46bc6172cfe32baca014afb57a3e1 | 20.1 KB |
tests/test_native_approval.pySHA-256077426eb9d97e4127a9ef5b4d2cf42ce915d51b67db870d561d6a68d0bd4258d | 6.9 KB |
tests/test_nextflow_mcp.pySHA-256d3cc927f3aea00047a48bcc8a16aba9126557a22a32c032e67b697ebe124c11e | 44.6 KB |
tests/test_preparation.pySHA-2565f85a478ab3b3b6dbecc54004f19ad4849000863d6827b336bf865eefa48b827 | 3.44 KB |
tests/test_readiness.pySHA-2562a0221d0214141e6891a0f013a55c34f93fd6dd63bc23c386d4a85c480c23a7e | 33.7 KB |
tests/test_report.pySHA-256206dafd6caacca515bbba9e710a8b1dfb6abf61eb788cb3ac8ebb1c945ddde41 | 34.5 KB |
tests/test_run_persistence.pySHA-25662a9e06ee637600d8f3a450909c0c3303ec87312f81011010b4ede4ef5fe47ec | 52.9 KB |
tests/test_snakemake_mcp.pySHA-2569756d3e527fe28c149a428682f275761a4a6f0e7e398c459b0891c591f273654 | 40.1 KB |
tests/test_ssh_transport.pySHA-2560004bc42163e4cd7da473c7838ead8297e67a2cb1fa7ee867872c4a3ff19e544 | 31.5 KB |
tests/test_workflow_catalog.pySHA-256eca902e790c656df1483aae8e31c625c1e06d503c704a3baee429b0b14eab79a | 6.1 KB |
tests/test_workflow_defaults.pySHA-25682a017d8645a3335b8e711cb1d1b855068e83ad5107f947b893c73e5c1b5bf5a | 6.24 KB |
tests_js/analysis-report.test.tsSHA-25655864ddbbb034745ab4cefa1fb9cd876910f935ac9a2be0af8e8d23cbb682f37 | 2.51 KB |
tests_js/analysis-summary.test.tsSHA-256bca164b0d4aca4ebcb3bfdcc372fa22bd50cc18cd997a008f060de3049612a82 | 3.1 KB |
tests_js/inline-contract.test.tsSHA-2564ad4558c372c384496a12315a20aee8dd0f0a25f2a51ae8e52ee59a5b9a5c90c | 10 KB |
tests_js/inline-sizing.test.tsSHA-25665d03025eaf7d69680ee80ce66c7c4cec1a1a31b9f787a06c038c57e1575f6a6 | 582 Bytes |
tests_js/run-refresh.test.tsSHA-2565e6f401c6473682e237577c7cedb7ebdd5834024132db4df44b16d6fa9f74099 | 1.88 KB |
tests_js/run-status.test.tsSHA-2560f5c40bf0d09780f7975d44759052c810790130e610e8a5475224e4e80609df2 | 1.81 KB |
tests_js/workflow-catalog.test.tsSHA-256261cd55607c097df3469fb6287b53ef76919ad7086b15bfb2608533c7e7099e8 | 10.4 KB |
tsconfig.jsonSHA-2569a18ceb7d05691eece7dfe37dc6eac0a893be9ba7adc3dd5668982462f4f7376 | 604 Bytes |
vite.config.tsSHA-2567f3728468c96ffb4852fe390f5f14abc0549e6e1376aafadbaa1dc60b6f5b889 | 298 Bytes |
vite.inline.config.tsSHA-256273b0decd42d9a07c97d7f971e0ad76f47b8b9dfabb1ba09d93a1bee62e32260 | 301 Bytes |
workflows/bulk_rnaseq_counts_qc/.snakemake-workflow-catalog.ymlSHA-256d79b9b2bd71ae49f285568e74a45a441e0c783d025476cf0c16526c317552d14 | 255 Bytes |
workflows/bulk_rnaseq_counts_qc/README.mdSHA-256657fcd7954b58aafe7a1ac89fdb7ae0c9073be62612ca44eb924aea0e52a520e | 1.18 KB |
workflows/bulk_rnaseq_counts_qc/config/README.mdSHA-25671be86ea89675dc7a18203300cd77cb2d7dadc6a00c3f9edf16d827a0b0a7deb | 2.08 KB |
workflows/bulk_rnaseq_counts_qc/config/config.jsonSHA-2564445f46f9caec7e482548ddb4ae17cf8d02d5835e8d024da2625e85987d7ac56 | 1.29 KB |
workflows/bulk_rnaseq_counts_qc/workflow/SnakefileSHA-25669c2b37cbdb722e83114019261b22422b1064bea857b928413bb69e9c6fac9da | 7.75 KB |
workflows/bulk_rnaseq_counts_qc/workflow/envs/salmon.yamlSHA-25692f3e1a7d0067ef836e5317aa7824da19a7aa7495748993eff2347717c3dd6e2 | 122 Bytes |
workflows/bulk_rnaseq_counts_qc/workflow/scripts/aggregate_salmon_quant.pySHA-256d5831c9e38cd70fd860ebe77b9bf355d452ebc3b2c5d72e65794dc9a35342dc4 | 10.4 KB |
workflows/fastq_qc/.snakemake-workflow-catalog.ymlSHA-256d79b9b2bd71ae49f285568e74a45a441e0c783d025476cf0c16526c317552d14 | 255 Bytes |
workflows/fastq_qc/README.mdSHA-25682361c5c138cd94975c9fe509870db4ffd48a059de142496a8fffff2f2583ede | 897 Bytes |
workflows/fastq_qc/config/README.mdSHA-256f9f9bf14c12ce9dc7a183cb9aaefb9be4008fe6a6955a3540c7ecd1eebb87c49 | 1.48 KB |
workflows/fastq_qc/config/config.jsonSHA-25691d0da952bfda3191d54a42da7e3ccbe153eeb13642526606f02d6fa8d6edcfa | 389 Bytes |
workflows/fastq_qc/workflow/SnakefileSHA-256f52cb43519fd5f5f6edd114bc33714e58ca1cd5b4c1364fd089d89d08900f36b | 2.21 KB |
workflows/fastq_qc/workflow/envs/fastq_qc.yamlSHA-256fc9a416942351cdd619710482143ce385492367927b49dd8d81809689b0a963d | 138 Bytes |
workflows/fastq_qc/workflow/rules/cutadapt.smkSHA-2561309916945bdd7f789db6215740386b66371f8c2fdffb6feff872e0c50fea6b5 | 1.15 KB |
workflows/fastq_qc/workflow/rules/fastp.smkSHA-256476bb997568a44dc492b1fb04b9bc43b642145bbe60bcf662ea6d1984dc8b059 | 1.15 KB |
workflows/fastq_qc/workflow/rules/none.smkSHA-25643cb20c29593b567b0d1541a553f3ac83d6b785d9f307ce9ded40e053c4c2dce | 59 Bytes |
workflows/fastq_qc/workflow/rules/trimmed_qc.smkSHA-2564c989e9f6e1c0c17ce3df67a9e97e73ddcaea73a9abc463c3360ecf4659b7a93 | 1.12 KB |
workflows/scrnaseq_fastq_to_count/.snakemake-workflow-catalog.ymlSHA-25670266987cacda70f1f5eb5e307cdb97e4062e9b6c275e3df883d8c7e63e09bec | 254 Bytes |
workflows/scrnaseq_fastq_to_count/README.mdSHA-2569ae4903c5d0853eb2f5264a2af24bf240637a23362b6e1b081b699dcfe31fc01 | 1.05 KB |
workflows/scrnaseq_fastq_to_count/config/README.mdSHA-256dc379e3f1864aa69e0f63bb21e2f339dfe99fbd722591a523e2cf2a1128099ae | 2.25 KB |
workflows/scrnaseq_fastq_to_count/config/config.jsonSHA-256450ae9673958b0936dce097571d9be83f22e5014a232ae37f48d9ec6e54cfcdc | 1.34 KB |
workflows/scrnaseq_fastq_to_count/workflow/SnakefileSHA-2567bb0d90a4b6ab9f38816feb1d42cffb22547a723e578d0d32637a2f744bee8b1 | 4.71 KB |
workflows/scrnaseq_fastq_to_count/workflow/envs/star.yamlSHA-256866ed3eb7c9991986a1e9f1e661266baba185287b5472be3e58029c5fc6398bb | 87 Bytes |
workflows/scrnaseq_fastq_to_count/workflow/profiles/container/profile.yamlSHA-2568eb7df6a0da52e940106fe9d3f5d7cd214008ae231e259e5f9616dc954d2d6f8 | 38 Bytes |
Files are archived as data; their code has not been executed. The package does not include private remote service code.