.codex-plugin/plugin.json

{
  "name": "ngs-analysis-workbench",
  "version": "0.2.16",
  "description": "Journey-oriented NGS data understanding, scientific analysis design, approval-gated execution, and file-backed result interpretation.",
  "author": {
    "name": "OpenAI",
    "email": "support@openai.com",
    "url": "https://openai.com/"
  },
  "homepage": "https://openai.com/gpt-rosalind/",
  "repository": "https://github.com/openai/openai",
  "license": "MIT",
  "keywords": [
    "ngs",
    "sequencing",
    "bioinformatics",
    "fastq",
    "rnaseq",
    "scrnaseq",
    "pipeline-routing",
    "snakemake",
    "nextflow",
    "nf-core"
  ],
  "mcpServers": "./.mcp.json",
  "skills": "./skills/",
  "interface": {
    "displayName": "NGS Analysis Workbench",
    "shortDescription": "Analyze sequencing data",
    "longDescription": "A journey-oriented NGS workbench for FASTQ QC, bulk RNA-seq, and single-cell RNA-seq. Focused skills establish the user's starting point, design toward a scientific outcome, bind that design to live Nextflow/nf-core or Snakemake capabilities, preserve checksum-bound native approval, and interpret completed results from file-backed evidence.",
    "developerName": "OpenAI",
    "category": "Scientific Research",
    "capabilities": [
      "Interactive",
      "Read",
      "Write"
    ],
    "websiteURL": "https://openai.com/gpt-rosalind/",
    "privacyPolicyURL": "https://openai.com/policies/privacy-policy/",
    "termsOfServiceURL": "https://openai.com/policies/terms-of-use/",
    "defaultPrompt": [
      "run a FastQC and Salmon QC on a public RNA-seq dataset and provide an interpretation of the results.",
      "run a scRNA-seq analysis with STARsolo on a public dataset and provide an interpretation of the results.",
      "run a NGS analysis on my sequencing data in my project."
    ],
    "brandColor": "#0F766E",
    "composerIcon": "./assets/app-icon.png",
    "logo": "./assets/app-icon.png",
    "screenshots": []
  }
}